View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12837_low_8 (Length: 228)
Name: NF12837_low_8
Description: NF12837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12837_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 38041115 - 38040923
Alignment:
| Q |
19 |
cagcatgttataaaagacatgataatggnnnnnnnncaaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgttt |
118 |
Q |
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| T |
38041115 |
cagcatgttataaaagacatgataatggttttttttcaaagcaaaagagattaatattaattttttttcataggagattaatactattaaaactttgttt |
38041016 |
T |
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| Q |
119 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaa |
211 |
Q |
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| T |
38041015 |
gagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaattaa |
38040923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 31841533 - 31841344
Alignment:
| Q |
20 |
agcatgttataaaagacatgataatggnnnnnnnn--caaagcaaaagagattaatattaannnnnnnncagaggagattaatactattaaaactttgtt |
117 |
Q |
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| T |
31841533 |
agcatgttataaaagacatgataatggttttttttttcaaagcaaaagagattaatattaagtttttt-cagaggagattaatattattaaaactttgtt |
31841435 |
T |
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| Q |
118 |
tgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacatgaactacaaccaaatgctagct |
205 |
Q |
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| T |
31841434 |
tgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagct |
31841344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 31837432 - 31837311
Alignment:
| Q |
87 |
cagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacat |
183 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
31837432 |
cagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacat |
31837333 |
T |
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| Q |
184 |
gaactacaaccaaatgctagct |
205 |
Q |
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| T |
31837332 |
gagctacaaccaaatgctagct |
31837311 |
T |
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