View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_high_15 (Length: 256)
Name: NF12838_high_15
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 18632913 - 18633147
Alignment:
| Q |
11 |
cacagagaccatacctgtttgtataaaaagcacatttatttgcaattttacactgatcttgctacacaaatcaaaccacattattgatacgcgtcaaaat |
110 |
Q |
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| T |
18632913 |
cacagagaccatacctatttgtataaaaagcacatttatttgcaattttacactgatcttgcaacacaaatcaaaccacattattgatacgcatcaaaat |
18633012 |
T |
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| Q |
111 |
ataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataatattatacctatgataatccaaatcat |
210 |
Q |
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| T |
18633013 |
ataacctatgataatattatgcactaattagatcaaaatttacactaactttgcaacataaaccataccataatattatacctatgataatccaaatcat |
18633112 |
T |
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| Q |
211 |
gcaatatatctgaaacaaaacatttagtggtgatg |
245 |
Q |
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| T |
18633113 |
gcaatatatctgaaacaaaacatttagtggtgatg |
18633147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 28975430 - 28975506
Alignment:
| Q |
164 |
caacataaaccataccataatattatacctatgataatccaaatcatgcaatatatctgaaacaaaacatttagtgg |
240 |
Q |
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| T |
28975430 |
caacacaaatcaaaccataatattatacatatgataatccaaatcgtgcaaaatattcaaaacaaaatatttagtgg |
28975506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 33270570 - 33270454
Alignment:
| Q |
104 |
tcaaaatataacctatgataatattatgcactaattagatcaaaatttacactagctttgcaacataaaccataccataa-tattatacctatgataatc |
202 |
Q |
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| T |
33270570 |
tcaaaacataaggtatgataatatttt-cattaattaaatcaaaatttacattgattttgcaacacaaatcaaaccataaatatcatacatatgataatc |
33270472 |
T |
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| Q |
203 |
caaatcatgcaatatatc |
220 |
Q |
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| T |
33270471 |
caaatcttgcaaaatatc |
33270454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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