View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_high_17 (Length: 250)
Name: NF12838_high_17
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 25820692 - 25820453
Alignment:
| Q |
1 |
aagaagtggaagacactttcagtgtctttagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcactagtcactgctaaatagat |
100 |
Q |
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| T |
25820692 |
aagaagtggaagactctttcagtgtctttagttgttttacggttttgaggtcaaaaagaaaatcccaccgagctgctgcactagtcactgctaaatagat |
25820593 |
T |
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| Q |
101 |
cagttcaagacagttagaaaaacagttagaagctgttatatcagttccagatttcatagagagataattgaggtggtttcttgttttacaagcatagtta |
200 |
Q |
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| T |
25820592 |
cagtttaagacagttagaaaaacagttagaagctgttatatcagttccagatttcctagagagataattgaggtggtttcttgttttacaagcaaagtta |
25820493 |
T |
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| Q |
201 |
ctctacatgaggtgtatcttaccttatgatcggacctatg |
240 |
Q |
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| T |
25820492 |
ctctacatgaggtgtatcttaccttatgatcggacctatg |
25820453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 25814782 - 25814682
Alignment:
| Q |
135 |
gttatatcagttccagatttcatagagagataattgaggtggtttcttgttttacaagcatagttactctacatgaggtgtatcttaccttatgatcgga |
234 |
Q |
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| T |
25814782 |
gttatatcagttccagatttca----gagttagttgaggtagtttcttgttttacaagcaaagttactctacatgaggtgcagcttaccttatgatagga |
25814687 |
T |
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| Q |
235 |
cctat |
239 |
Q |
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|||| |
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| T |
25814686 |
gctat |
25814682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25814948 - 25814859
Alignment:
| Q |
1 |
aagaagtggaagacactttcagtgtctttagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcactagtcactg |
90 |
Q |
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|||||||||||||| ||||||||| ||| | |||||||| ||||||||| |||||||||| | |||| ||||||| ||||||||||| |
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| T |
25814948 |
aagaagtggaagactttttcagtgtgttttgctgttttacgattttgaggtaaaaaagaaaaactcaccaagctgctgaactagtcactg |
25814859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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