View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_high_24 (Length: 211)
Name: NF12838_high_24
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 5159249 - 5159412
Alignment:
| Q |
31 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
130 |
Q |
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| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
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| Q |
131 |
gagacttcatcttcttgttttgtcatatgcactcnnnnnnnncttgaaattttttaaatagtca |
194 |
Q |
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| T |
5159349 |
gagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtca |
5159412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 5181476 - 5181608
Alignment:
| Q |
30 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
129 |
Q |
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| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
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| Q |
130 |
tgagacttcatcttcttgttttgtcatatgcac |
162 |
Q |
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| T |
5181576 |
tgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
30 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
81 |
Q |
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| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
31 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
92 |
Q |
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| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
96 |
ataccaatttgtcatctaggattctccaagaatttg |
131 |
Q |
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| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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