View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_high_3 (Length: 418)
Name: NF12838_high_3
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Original strand, 10220279 - 10220664
Alignment:
| Q |
19 |
ccttggtgtagcgtgaacccttttccttctccggagaacttggaggatgagatttcaaagtttcctttatacttcaatggccctccaccgtttgagtgta |
118 |
Q |
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| T |
10220279 |
ccttggtgtagtgtgaacccttttccttctccggagaacttggaggacgagatttcaaagtttcctttatacttcaatggccctccaccgtttgagtgta |
10220378 |
T |
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| Q |
119 |
ctgtcaaggctggggagattctttacttgtatgattctcttcttttgcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcg |
218 |
Q |
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| T |
10220379 |
ctgtcaaggctggggagattctttacttgtatgattctcttcttttgcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcg |
10220478 |
T |
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| Q |
219 |
caatatatttaatttagctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcatccccccagttt |
318 |
Q |
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| T |
10220479 |
caatatatttaatttagctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcattcccccagttt |
10220578 |
T |
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| Q |
319 |
ttatgctattgcaaattcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcc |
404 |
Q |
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| T |
10220579 |
ttatgctattgcaaattcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcc |
10220664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 408
Target Start/End: Complemental strand, 13853672 - 13853311
Alignment:
| Q |
40 |
tttccttctccggagaacttggaggatgagatttcaaagtttcctttatacttcaatggccctccaccgtttgagtgtactgtcaaggctggggagattc |
139 |
Q |
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| T |
13853672 |
tttccttctccggagaacttggaggatgagatttcaaagtttcctttatacttcaatgacccttcaccgtttgaatgtactgttaagaatggggagattc |
13853573 |
T |
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| Q |
140 |
tttacttgtatgattctcttctttt-----gcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcgcaatatatttaattta |
234 |
Q |
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| T |
13853572 |
tttacttgtatgattcccttcttttccttggcattgcatcatgtatctgtttttcttaatctttcttctgttgaatgatattctcaacatatttaattta |
13853473 |
T |
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| Q |
235 |
gctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcatccccccagtttttatgctattgcaaat |
334 |
Q |
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| T |
13853472 |
cctgatttcatattgtaccatttatatttaatttacaagtaagaagaaaatgttgcagcattgcttggcacattcccccagtttttatgctattgcaaat |
13853373 |
T |
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| Q |
335 |
tcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcctatg |
408 |
Q |
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| T |
13853372 |
tcatac------------ccataatattcatgattaagcaacttggttttccaatatgtcatgtcatgcttatg |
13853311 |
T |
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