View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_high_9 (Length: 290)
Name: NF12838_high_9
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 42745647 - 42745902
Alignment:
| Q |
25 |
tccacaagcgtatgtgccatttggaatcggcactcggttgtgcgtggggaagaactttgcaatggttgaactaaaggttgtgctagcccttattgtctcc |
124 |
Q |
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| T |
42745647 |
tccacaagcgtatgtgccatttggaatcggcactcggttgtgcgtggggaagaactttgcaatggttgaactaaaggttgtgctagcccttattgtctcc |
42745746 |
T |
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| Q |
125 |
aagttcagcttctctttgtctcctagttataagcattctcctgcatataatatgattgtagagccaggacatggtgtgtatcttctcattcagaagaact |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42745747 |
aagttcagcttctctttgtctcctagttataagcattctcctgcatataatatgattgtagagccaggacatggtgtgtatcttctcattcagaagaact |
42745846 |
T |
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| Q |
225 |
gatgaaaccaattcatcaactttaatgcacaagcatttgatttcttctggcctatg |
280 |
Q |
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| T |
42745847 |
gatgaaaccaattcatcaactttaatgcacaatcatttgatttcttctggcctatg |
42745902 |
T |
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