View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12838_low_10 (Length: 285)

Name: NF12838_low_10
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12838_low_10
NF12838_low_10
[»] chr2 (4 HSPs)
chr2 (2-88)||(11654785-11654871)
chr2 (2-88)||(11668553-11668639)
chr2 (193-225)||(11654648-11654680)
chr2 (193-225)||(11668416-11668448)
[»] chr4 (1 HSPs)
chr4 (5-42)||(25545252-25545289)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 11654871 - 11654785
Alignment:
Q  2 gaagaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggcggtgggttatgtgatgtagaagggctgttagttgat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11654871 gaagaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggtggtgggttatgtgatgtagaagggctgttagttgat 11654785  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 11668639 - 11668553
Alignment:
Q  2 gaagaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggcggtgggttatgtgatgtagaagggctgttagttgat 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11668639 gaagaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggtggtgggttatgtgatgtagaagggctgttagttgat 11668553  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 11654680 - 11654648
Alignment:
Q  193 tggtgagctgtgtggtgtagaagggctttgagg 225  Q
    |||||||||||||||||||||||||||||||||    
T  11654680 tggtgagctgtgtggtgtagaagggctttgagg 11654648  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 11668448 - 11668416
Alignment:
Q  193 tggtgagctgtgtggtgtagaagggctttgagg 225  Q
    |||||||||||||||||||||||||||||||||    
T  11668448 tggtgagctgtgtggtgtagaagggctttgagg 11668416  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 25545289 - 25545252
Alignment:
Q  5 gaagaggaagaggaagaggaagatgaaggtgtagatga 42  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  25545289 gaagaggaagaggaagaggaagaggaaggtgaagatga 25545252  T

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