View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_15 (Length: 264)
Name: NF12838_low_15
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 48525831 - 48526043
Alignment:
| Q |
15 |
agagattgcaaaatttgagattaacttgatcttgtgagcctccctccaagtttgtttgataatataaaactaatatgtgggctatgggtataaatggtgt |
114 |
Q |
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| T |
48525831 |
agagattgcaaaatttgagattaacttgattttgtgagcctcc----aagtttgtttgataatataaaattaatatgtgggctatgggtata-------- |
48525918 |
T |
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| Q |
115 |
atatgtacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatca |
214 |
Q |
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| T |
48525919 |
-------cttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatca |
48526011 |
T |
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| Q |
215 |
ctgtataccgtgaacaagaaagatgtgcttgt |
246 |
Q |
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| T |
48526012 |
ctgtataccgtgaacaagaaagatgtgcttgt |
48526043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 7221324 - 7221444
Alignment:
| Q |
120 |
tacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatcactgta |
219 |
Q |
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| T |
7221324 |
tacttacttgcattttggcaaaatcaaggagatgggctgaatcaaattctttgtttccacatttgaccttttgattatatttggcaagtaaatcactata |
7221423 |
T |
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| Q |
220 |
taccgtgaacaagaaagatgt |
240 |
Q |
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| T |
7221424 |
tacagtgaacaagaaagatgt |
7221444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 50307021 - 50306898
Alignment:
| Q |
120 |
tacttacttgttttttggcaaaatcaaggacatgagatgagtcaaattctttgtttccacatttaactttttgtttatatttggcaagcaaatcactgta |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| ||| | || |||||||||||||||||||||||||| |
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| T |
50307021 |
tacttacttgttttttggcaaaatcaaggagatgagctgagtcaaattctttgttttcacatttgactatctgattatatttggcaagcaaatcactgta |
50306922 |
T |
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| Q |
220 |
taccgtgaacaagaaagatgtgct |
243 |
Q |
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||| || |||||||| |||||||| |
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| T |
50306921 |
tacagtaaacaagaacgatgtgct |
50306898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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