View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_17 (Length: 253)
Name: NF12838_low_17
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 17426991 - 17427136
Alignment:
| Q |
9 |
gagatggacatcacctcgaagttcttggttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagt |
108 |
Q |
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| T |
17426991 |
gagatggaaagcacctcgaagttcttggttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagt |
17427090 |
T |
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| Q |
109 |
agttattaatactctcactaaccaactagctcactttgtagcaccg |
154 |
Q |
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| T |
17427091 |
agttattaatactctcactaactaactagctcactttgtagcaccg |
17427136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 17428502 - 17428567
Alignment:
| Q |
167 |
catattataattcttcaacaatttggaaaaacagatttatattactgttttctccttcattttaca |
232 |
Q |
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| T |
17428502 |
catattataattcttcaacaatttggaaaaacagatttatattactgttgtctccttcattttaca |
17428567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 4652959 - 4653071
Alignment:
| Q |
9 |
gagatggacatcacctcgaagttcttggttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagt |
108 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652959 |
gagatggaaagcacctcgaagttcttggttactataatcccttacctggtcaagatggtggcaaaagaatgggtatcaactttgatagagtcaagtaagt |
4653058 |
T |
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| Q |
109 |
agttattaatact |
121 |
Q |
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| T |
4653059 |
agtcattaatact |
4653071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 45389716 - 45389650
Alignment:
| Q |
167 |
catattataattcttcaacaatttggaaaaacagatttatattactgttttctccttcattttacat |
233 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
45389716 |
catattataattcttaaacaatttggaaaaacagatatatattactgttttctccttcattgtacat |
45389650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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