View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_2 (Length: 552)
Name: NF12838_low_2
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 367 - 537
Target Start/End: Original strand, 14222757 - 14222928
Alignment:
| Q |
367 |
caaatggaaaagatgatgaggtactctttgatttatgaaacgccgtaacctgagaaactgccgttggcg-cgcttttaccttcgatgttgtttgccattt |
465 |
Q |
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| T |
14222757 |
caaatggaaaagatgatgaggtactctttgatttatgaaacgccgtaacctgagaaactgccgttggcggcgctgttaccttcgatgttgtttgccattt |
14222856 |
T |
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| Q |
466 |
agacacacttttgtgtaccttgggtcgggtccaatccggtgaagtttgtcattaaatttatgaaaacaaatc |
537 |
Q |
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| T |
14222857 |
agacacacttttgtgtaccttgggtcgggtccgatccggtgaagtttgtcattaaatttatgaaaacaaatc |
14222928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 228 - 471
Target Start/End: Original strand, 14234809 - 14235039
Alignment:
| Q |
228 |
gctagaaactccctcacactcttacaatgaatgcacctcatcagtttctccattgaaccatcatccgaagccatgaataacggtttcatttcatcgatct |
327 |
Q |
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| T |
14234809 |
gctaggaactccctcaaactctcacaaagaatacacctcatcattttctctattgaaccattatccgaagccttgcataatggtttcatttcatcgatct |
14234908 |
T |
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| Q |
328 |
ttgaagtagaaaacaccggagtatacttcgaataatggtcaaatggaaaagatgatgaggtactctttgatttatgaaacgccgtaacctgagaaactgc |
427 |
Q |
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| T |
14234909 |
ttgaagtagaaaacac-------tact--ga-----ggtcgaatggaaaagatgatgaggtactttttgatctttgaaacgccgtaacctgagaaactgt |
14234994 |
T |
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| Q |
428 |
cgttggc-gcgcttttaccttcgatgttgtttgccatttagacac |
471 |
Q |
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| T |
14234995 |
agttggcggcgctgttacctccgatgttgtttgccatctagacac |
14235039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 14222661 - 14222759
Alignment:
| Q |
156 |
gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctagaaactccctcacactcttacaa |
254 |
Q |
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| T |
14222661 |
gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctaggaactccctcacactcttacaa |
14222759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 14232509 - 14232584
Alignment:
| Q |
162 |
agtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctagaaact |
237 |
Q |
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| T |
14232509 |
agtgacagagataaagcaaggaaacaaggtctgatgacaagtaacggatcttttggtttcacctctgctaggaact |
14232584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 14222397 - 14222444
Alignment:
| Q |
74 |
aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt |
121 |
Q |
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| T |
14222397 |
aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt |
14222444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 14248848 - 14248771
Alignment:
| Q |
264 |
ctcatcagtttctccattgaaccatcatccgaagccatgaataacggtttcatttcatcgatctttgaagtagaaaac |
341 |
Q |
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| T |
14248848 |
ctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatcaatctttgaactagaaaac |
14248771 |
T |
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