View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_20 (Length: 243)
Name: NF12838_low_20
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25820747 - 25820968
Alignment:
| Q |
1 |
cttattcatgtaagttcttcttttataattctagatttatgtatttttcttattcttcgcgatgagtcagtgaatttcacctaaagatgcaatcttttct |
100 |
Q |
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| T |
25820747 |
cttattaatgtaagttcttcttttataattctagatttatgtatttttcttattcttcgcgatgagtcagtgaatttcacctaaagatgcaat-ttttct |
25820845 |
T |
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| Q |
101 |
aaaattatatgagattgcaatgtgctttcttggatgctaagaaaattcctgaaaaggggtgtgttctgaattatttgtgtttgtttaaaccttcaccaag |
200 |
Q |
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| T |
25820846 |
aaaattatatgagattgcaatgtgttttcttggatgccaagaaaattcctgaaaaggggtgtgttctgaattatttgtgtttgtctaaaccttcaccaag |
25820945 |
T |
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| Q |
201 |
ttttggtgctgtttccttgctca |
223 |
Q |
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| T |
25820946 |
ttttggtgctgtttccttgctca |
25820968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 25815003 - 25815186
Alignment:
| Q |
1 |
cttattcatgtaagttcttcttttataattctagatttatgtatttttcttattcttcgcgatgagtcagtgaatttcacctaaagatgcaatcttttct |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||| |
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| T |
25815003 |
cttattcatgtaagttcttctattataattctagatttatgtatttttcttattcttcatgctgagtcaatgaatttcacctaaagatgctatcttttct |
25815102 |
T |
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| Q |
101 |
aaaattatatgagattgcaatgtgctttcttggatgctaagaaaattcctgaaaaggggtgtgttctgaattatttgtgtttgt |
184 |
Q |
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| T |
25815103 |
aaaattatatgagattgcaatgtgttttcttggatgctaagaaaattcctgaaaaaaggtgtgttctgaattatttgtatttgt |
25815186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 155
Target Start/End: Original strand, 25820966 - 25821115
Alignment:
| Q |
6 |
tcatgtaagttcttcttttataattctagatttatgtatttttcttattcttcgcgatgagtcagtgaatttcacctaaagatgcaatcttttctaaaat |
105 |
Q |
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||||||||||| ||||||| | ||| | ||| ||||||||||||||||||| |||| ||| ||| |||| ||||| || ||||||||| ||| |
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| T |
25820966 |
tcatgtaagttattcttttttgatttcacctttgtgtatttttcttattcttcttgatggttcattgagtttcggctaaaaatttgatcttttcttaaag |
25821065 |
T |
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| Q |
106 |
tatatgagattgcaatgtgctttcttggatgctaagaaaattcctgaaaa |
155 |
Q |
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| T |
25821066 |
tatttgagattacaatgtgttttcttggttgctaagaaagatcctgaaaa |
25821115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 25815206 - 25815238
Alignment:
| Q |
187 |
aaaccttcaccaagttttggtgctgtttccttg |
219 |
Q |
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| T |
25815206 |
aaaccttcaccaagttttggtgctgtttccttg |
25815238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 25815326 - 25815404
Alignment:
| Q |
92 |
atcttttctaaaattatatgagattgcaatgtgctttcttggatgctaagaaaattcctgaaaaggggtgtgttctgaa |
170 |
Q |
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||||||||||||| || ||||||| ||||||| ||| |||| |||||||||| || ||||||| |||||||| |||| |
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| T |
25815326 |
atcttttctaaaagcatttgagattacaatgtgtttttttggttgctaagaaagtttctgaaaaatggtgtgttttgaa |
25815404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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