View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_23 (Length: 218)
Name: NF12838_low_23
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_23 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33323472 - 33323669
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323472 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
33323571 |
T |
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| Q |
101 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacggaaaggaaatgagg |
198 |
Q |
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| T |
33323572 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacggaaaggaaatgagg |
33323669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1041881 - 1042078
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041881 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
1041980 |
T |
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| Q |
101 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacggaaaggaaatgagg |
198 |
Q |
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| T |
1041981 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacggaaaggaaatgagg |
1042078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41192946 - 41193143
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41192946 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
41193045 |
T |
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| Q |
101 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacggaaaggaaatgagg |
198 |
Q |
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| T |
41193046 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacggaaaggaaatgagg |
41193143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41200202 - 41200399
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200202 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttggaagaact |
41200301 |
T |
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| Q |
101 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttaaggctcaataacacggacggaaaggaaatgagg |
198 |
Q |
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| T |
41200302 |
taaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaacacggacggaaaggaaatgagg |
41200399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41407635 - 41407727
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttgg |
93 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41407635 |
ggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttgg |
41407727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3307 - 3216
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttg |
92 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307 |
ggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttg |
3216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 23863 - 23772
Alignment:
| Q |
1 |
ggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttg |
92 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23863 |
ggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaagtatctgagaagttg |
23772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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