View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12838_low_26 (Length: 211)

Name: NF12838_low_26
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12838_low_26
NF12838_low_26
[»] chr6 (16 HSPs)
chr6 (1-207)||(5345086-5345292)
chr6 (3-196)||(5243573-5243767)
chr6 (3-196)||(5689820-5690013)
chr6 (16-207)||(5176982-5177173)
chr6 (16-207)||(5278809-5279000)
chr6 (17-196)||(5066355-5066534)
chr6 (8-174)||(5073591-5073757)
chr6 (13-174)||(5096945-5097106)
chr6 (3-161)||(5157324-5157482)
chr6 (68-174)||(5434480-5434586)
chr6 (80-167)||(5181632-5181719)
chr6 (13-144)||(5370808-5370939)
chr6 (13-174)||(5128100-5128261)
chr6 (13-174)||(5350625-5350786)
chr6 (13-161)||(5102310-5102458)
chr6 (13-174)||(5426147-5426308)
[»] chr4 (1 HSPs)
chr4 (80-131)||(6545216-6545267)
[»] scaffold1476 (1 HSPs)
scaffold1476 (127-185)||(1509-1567)
[»] chr2 (1 HSPs)
chr2 (127-185)||(22583919-22583977)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 5345086 - 5345292
Alignment:
Q  1 atatctcctgcaatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5345086 atatctcctgcgatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtc 5345185  T
Q  101 tatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5345186 tatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatttc 5345285  T
Q  201 tgctact 207  Q
     ||||||    
T  5345286 agctact 5345292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 5243767 - 5243573
Alignment:
Q  3 atctcctgcaatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtcta 102  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||    
T  5243767 atctcctgcgatgtcatctctggtttctttagatataccgcatagtagctcccaagagctgtcaactatttccatccacctttcaaggcttcgaagccta 5243668  T
Q  103 tgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttat-acgccacattttctaaggaaatggaatcga 196  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  5243667 ttggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgccttataacaccacattttctaaggaaatggaatcga 5243573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 5690013 - 5689820
Alignment:
Q  3 atctcctgcaatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtcta 102  Q
    |||| |||| ||||||||||| ||||||||||||||||||  |||||| || || || |||||| |||||||||||||||||||||||||||||||||||    
T  5690013 atctgctgccatgtcatctcttgtttctttagatataccatgtagtagttctcaggaactgtcatctatttccaaccacctttcaaggcttcgaagtcta 5689914  T
Q  103 tgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcga 196  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  5689913 tgggtagagtgtggttcagaacttcaactttctgaagatgcaaaaatcattttggatgctttatacgccacaatttctaaggaaatggattcga 5689820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 5176982 - 5177173
Alignment:
Q  16 tcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtg 115  Q
    |||||||| |||||||||||||||||||||||||| || || || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5176982 tcatctctcgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagagtgtg 5177081  T
Q  116 gctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatctctgctact 207  Q
    | |||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||| || ||||  |||||||||    
T  5177082 gttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattgattcgacttctgctact 5177173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 5278809 - 5279000
Alignment:
Q  16 tcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtg 115  Q
    |||||||| |||||||||||||||||||||||||| || || || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5278809 tcatctcttgtttctttagatataccacatagtagttctcaggaactgtcatctatttccgaccacctttcaaggcttcgaagtctatgggtagagtgtg 5278908  T
Q  116 gctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcgatctctgctact 207  Q
    | |||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||| || ||||  |||||||||    
T  5278909 gttcagaacttcaactttctgtagatgcaaaaatcattttggatgctttatatgccacaatttctaaggaaattgattcgacttctgctact 5279000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 5066534 - 5066355
Alignment:
Q  17 catctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtgg 116  Q
    ||||||| ||| |||||||| ||||||||||||||||||| || || ||| | ||||||||  ||||| |||| ||||||||||| ||||| |||||  |    
T  5066534 catctcttgttcctttagatgtaccacatagtagctcccatgaactatcatcaatttccaagtaccttccaagtcttcgaagtctttgggtggagtgcag 5066435  T
Q  117 ctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaaggaaatggaatcga 196  Q
     |||||||  ||||||||| | ||||||  ||| || ||||||||||||||||| ||  ||||||||||  |||||||||    
T  5066434 ttcagaacatcaactttctaatgatgcaacaataatattggatgctttatacgctactctttctaaggatgtggaatcga 5066355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 5073757 - 5073591
Alignment:
Q  8 ctgcaatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggt 107  Q
    ||||||||||||| |  ||| |||||||| ||| | ||||||| ||||| || || ||| ||||||||||  ||||| || |||||||| |||| |||||    
T  5073757 ctgcaatgtcatcccatgttcctttagatgtactaaatagtagttcccatgaactatcatctatttccaattaccttccatggcttcgatgtctttgggt 5073658  T
Q  108 agagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca 174  Q
     || || || ||| |||| ||||||||| |||||||| |||  ||||||||||| ||||| ||||||    
T  5073657 ggaatgcggatcaaaacttcaactttctcaagatgcagaaagaattttggatgccttatatgccaca 5073591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 5096945 - 5097106
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    |||||||| || |||||| ||||| ||||| ||||||| ||||| || || | | | ||||||||  ||||| |||| ||||||||||| ||||| ||||    
T  5096945 atgtcatcccttgtttctgtagatgtaccaaatagtagttcccatgaactattatcgatttccaagtaccttccaagtcttcgaagtctttgggtggagt 5097044  T
Q  113 gtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca 174  Q
    |  |||||||||| ||||||||| | |||||   ||| ||||||||||| ||||| ||||||    
T  5097045 gcagctcagaacttcaactttctcatgatgctgcaataattttggatgccttatatgccaca 5097106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 5157482 - 5157324
Alignment:
Q  3 atctcctgcaatgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtcta 102  Q
    |||| |||| ||||||||||| ||| |||||||| ||||||||||||  ||||| || || ||| | |||||| |    ||| |||| ||||||||||||    
T  5157482 atctgctgccatgtcatctcttgttcctttagatgtaccacatagtaattcccaggaactatcatcgatttcccagtgtcttccaagtcttcgaagtcta 5157383  T
Q  103 tgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgc 161  Q
    ||||| |||||  |||| ||||| ||||||||| | ||||||  ||| |||||||||||    
T  5157382 tgggtggagtgcagctcggaacttcaactttctcatgatgcagcaataattttggatgc 5157324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 5434480 - 5434586
Alignment:
Q  68 ctatttccaaccacctttcaaggcttcgaagtctatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttata 167  Q
    ||||||||||||| |||||| |||||| |||||||||| |||| ||| | || ||| | |||||||||||||||||| | || ||||||||||| ||| |    
T  5434480 ctatttccaaccagctttcagggcttcaaagtctatggatagattgtaggtcggaatttcaactttctgaagatgcaaagataattttggatgccttaca 5434579  T
Q  168 cgccaca 174  Q
     ||||||    
T  5434580 tgccaca 5434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 5181719 - 5181632
Alignment:
Q  80 acctttcaaggcttcgaagtctatgggtagagtgtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttata 167  Q
    ||||| || |||||||| |||| ||||| ||||||||||||||||| ||||||||| ||||  || |||  |||||||||||||||||    
T  5181719 accttccatggcttcgatgtctttgggttgagtgtggctcagaacttcaactttctcaagacacagaaagaattttggatgctttata 5181632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 5370808 - 5370939
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    ||||||||||| ||| |||||||| ||||||||||||| ||||| || || ||| | |||| |||  ||||| |||  ||||||||||| ||||| || |    
T  5370808 atgtcatctcttgttcctttagatgtaccacatagtagttcccatgaactatcatcaattttcaagtaccttccaattcttcgaagtctttgggtggaat 5370907  T
Q  113 gtggctcagaactacaactttctgaagatgca 144  Q
    || |||| ||||| ||||||||| | ||||||    
T  5370908 gtagctcggaacttcaactttctcatgatgca 5370939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 5128261 - 5128100
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    ||||||||||| ||| || ||||| ||||||||||||| ||||| || || ||  | || ||| |  ||||| |||| ||||||||||| ||| | ||||    
T  5128261 atgtcatctcttgttcctctagatgtaccacatagtagttcccacgaactatcgtcgatgtcccagtaccttccaagtcttcgaagtctttggatggagt 5128162  T
Q  113 gtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca 174  Q
    |  |||||||||| ||||||||| | ||||||  ||| ||||||||||| || || ||||||    
T  5128161 gcagctcagaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccaca 5128100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 5350625 - 5350786
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    ||||||||||| ||| |||||||| ||||||||||||| ||||| || || ||| | |||||| |    ||| |||| |||| |||||| || || ||||    
T  5350625 atgtcatctcttgttcctttagatgtaccacatagtagttcccaggaactatcatcgatttcccagtgtcttccaagtcttcaaagtctttgtgtggagt 5350724  T
Q  113 gtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca 174  Q
    || |||| ||||| ||||||||| | ||||||  ||| ||||||||||| || || ||||||    
T  5350725 gtagctcggaacttcaactttctcatgatgcagcaataattttggatgccttgtatgccaca 5350786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 5102458 - 5102310
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    ||||||||||| ||| || ||||| ||||||||||||| ||||| || || ||| | |||||||   ||||| |||  ||||||||||| ||||| ||||    
T  5102458 atgtcatctcttgttcctctagatgtaccacatagtagttcccacgaactatcatcgatttccatgtaccttccaaatcttcgaagtctttgggtggagt 5102359  T
Q  113 gtggctcagaactacaactttctgaagatgcacaaatcattttggatgc 161  Q
    |  | |||||||  ||||||||| | ||||||  ||| |||||||||||    
T  5102358 gcagttcagaacgtcaactttctcatgatgcagcaataattttggatgc 5102310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 5426147 - 5426308
Alignment:
Q  13 atgtcatctctggtttctttagatataccacatagtagctcccaagatctgtcaactatttccaaccacctttcaaggcttcgaagtctatgggtagagt 112  Q
    ||||||||||| ||| |||||||| ||||||||||||  ||||| || || ||| | |||||| |  ||||| |||  |||| ||| || ||||| ||||    
T  5426147 atgtcatctcttgttcctttagatgtaccacatagtaattcccaggaactatcatcgatttcccagtaccttccaaatcttcaaaggctttgggtggagt 5426246  T
Q  113 gtggctcagaactacaactttctgaagatgcacaaatcattttggatgctttatacgccaca 174  Q
    |  |||||||||| ||||||||| | ||||||  ||| ||||| ||||| || || ||||||    
T  5426247 gcagctcagaacttcaactttctcatgatgcagcaataattttagatgccttgtatgccaca 5426308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 6545267 - 6545216
Alignment:
Q  80 acctttcaaggcttcgaagtctatgggtagagtgtggctcagaactacaact 131  Q
    ||||| ||| |||||||||||| || || |||||||||||||||||||||||    
T  6545267 accttacaaagcttcgaagtctttgtgtggagtgtggctcagaactacaact 6545216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 1509 - 1567
Alignment:
Q  127 caactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaagga 185  Q
    ||||| ||| |||||| | |||||||||||||| |||| ||||||||| ||||||||||    
T  1509 caactgtctaaagatggaaaaatcattttggattctttttacgccacactttctaagga 1567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 22583977 - 22583919
Alignment:
Q  127 caactttctgaagatgcacaaatcattttggatgctttatacgccacattttctaagga 185  Q
    ||||||||| |||||| | |||||||||||||| |||| |||||||||  |||||||||    
T  22583977 caactttctaaagatggaaaaatcattttggattctttttacgccacacattctaagga 22583919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University