View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12838_low_4 (Length: 378)
Name: NF12838_low_4
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 41627055 - 41627406
Alignment:
| Q |
11 |
cagagattttagatgaggtactgctttatcagacaggaaagactctcactcaacaccaacaagcatcacataatgttgattcaggaggaaaggcaaagga |
110 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41627055 |
cagagattttagatgaggtactgctttatcagaaaggaaagactctcactcaataccaacaagcatcacataatgttgattcaggaggaaaggcaaagga |
41627154 |
T |
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| Q |
111 |
aacacattcgcgtttgaagaaagcatctacgacaaacaatgccgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41627155 |
aacacattcgcgtttgaagaaagcatctacgacaaacaatgccgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctac |
41627254 |
T |
|
| Q |
211 |
gatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41627255 |
gatcaaaggaatacagatgagctactcaaacagattaggcatcactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
41627354 |
T |
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| Q |
311 |
ttgagataagattggctgccgagacgccatcatatcagcctcttgatgtggc |
362 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41627355 |
ttgagataagattggctgctgagacgccatcatatcagcctcttgatgtggc |
41627406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 41624094 - 41624445
Alignment:
| Q |
11 |
cagagattttagatgaggtactgctttatcagacaggaaagactctcactcaacaccaacaagcatcacataatgttgattcaggaggaaaggcaaagga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
41624094 |
cagagattttagatgaggtactgctttatcagacaggaaagactctcactcaacaccaacaagcatcttataattatgattcaggaggaaaggaaaagga |
41624193 |
T |
|
| Q |
111 |
aacacattcgcgtttgaagaaagcatctacgacaaacaatgccgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctac |
210 |
Q |
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||||||||||| |||||||||||||||||| || || |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41624194 |
aacacattcgcttttgaagaaagcatctactacgaaaaatgtcgcggctgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctac |
41624293 |
T |
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| Q |
211 |
gatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41624294 |
gatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
41624393 |
T |
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| Q |
311 |
ttgagataagattggctgccgagacgccatcatatcagcctcttgatgtggc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41624394 |
ttgagataagattggctgccgagacgccatcatatcagcctctttatgtggc |
41624445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 41620748 - 41621096
Alignment:
| Q |
11 |
cagagattttagatgaggtactgctttatcagacaggaaagactctcactcaacaccaacaagcatcacataatgttgattcaggaggaaaggcaaagga |
110 |
Q |
| |
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||||||| |||||||||||||| |||| |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
41620748 |
cagagatcttagatgaggtacttctttgtcagcaaggaaggacactaactcaacaccaacaagcatcacagactgttgattcaggagaaaaggcaaaggc |
41620847 |
T |
|
| Q |
111 |
aacacattcgcgtttgaagaaagcatctacgacaaacaatgccgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctac |
210 |
Q |
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| ||| |||||| | |||||||| |||||| || ||||||||| | | ||||||||||||||| ||||||| |||||||||||| || ||||| ||||| |
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| T |
41620848 |
agcacgttcgcgatcgaagaaagtatctactacgaacaatgccacagttgtggatttgtggactatgctaactcaatgtgcacaggccgtggcaagctat |
41620947 |
T |
|
| Q |
211 |
gatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtc |
310 |
Q |
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||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| || |||||||| || || ||||||||||||||||||||||||| |
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| T |
41620948 |
gatcaaaggaatacaaatgagctactcaagcagattaggaaacactcttcgccttttggggatggacttcagcggttagctcattactttgctaatggtc |
41621047 |
T |
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| Q |
311 |
ttgagataagattggctgccgagacgccatcatatcagcctcttgatgt |
359 |
Q |
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||||||||||||| |||||||||| ||||| ||| ||| |||||||| |
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| T |
41621048 |
ttgagataagatttgctgccgagattccatcgtatatgccgcttgatgt |
41621096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 23930095 - 23930227
Alignment:
| Q |
183 |
tcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaa |
282 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||| || |||| |||| || ||||||||||| || |||||||| ||||||||||| || |
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| T |
23930095 |
tcaatgtgcacaagctgttggtagctatgatcaaaggaatgcaaatgatatactgaagcagattaggcagcattcttcgccaagtggcgatggacttcag |
23930194 |
T |
|
| Q |
283 |
cgtttagctcattactttgctaatggtcttgag |
315 |
Q |
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||||||||||||||||||||| |||| |||||| |
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| T |
23930195 |
cgtttagctcattactttgctgatggacttgag |
23930227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 315
Target Start/End: Complemental strand, 23912438 - 23912350
Alignment:
| Q |
227 |
atgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgag |
315 |
Q |
| |
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|||||||||| || |||||||||||||| ||||| || | || ||||||| ||| | || |||||||||||||| ||||| |||||| |
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| T |
23912438 |
atgagctactgaagcagattaggcaacattcttcaccctctggggatggaccacaaaggttggctcattactttgccaatggccttgag |
23912350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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