View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12838_low_7 (Length: 332)
Name: NF12838_low_7
Description: NF12838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12838_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 1855101 - 1855333
Alignment:
| Q |
19 |
ctaaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1855101 |
ctaaacaagtcctaccaggctgcaattacacctgtggaggtgtaaaagttccatatccatttggcataggaaattcaacagcacaagatcatacaccatg |
1855200 |
T |
|
| Q |
119 |
ttacataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1855201 |
ttacataaattccaaatttatgctcacttgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatg |
1855300 |
T |
|
| Q |
219 |
gaaatgagatttttcgtctcacgtctctgtacg |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
1855301 |
gaaatgagatttttcgtctcacatctctgtacg |
1855333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 1818087 - 1817866
Alignment:
| Q |
19 |
ctaaacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
1818087 |
ctaaacaagtcctaccaggctgcaattacacctgtggagatttaacaattccatatccatttggcataggaaattcaacagcacaacatcatacaccatg |
1817988 |
T |
|
| Q |
119 |
ttacataaattccaaatttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatg |
218 |
Q |
| |
|
|||||| |||| |||||| |||| ||| | |||| || ||||||||| || | ||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
1817987 |
ttacatggattcaaaatttgaactcacctgtgtaaacaactcaaaattaattcggcctaggggtatcgaagtcctggacataaatccccaaggtcaagtg |
1817888 |
T |
|
| Q |
219 |
gaaatgagatttttcgtctcac |
240 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
1817887 |
gaaatgaaattttcagtctcac |
1817866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 1845015 - 1844913
Alignment:
| Q |
22 |
aacaagtcctacctggctgcaattacacttgtggaggtgtaaaagttccatatccatttggcataggaaattcaacaacacaagatcatacaccatgtta |
121 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1845015 |
aacaagtcctacctggctgcaactatacttgtggagatataaacattccatatccatttggcataggaaattcaacaacacaagatcatacaccatttta |
1844916 |
T |
|
| Q |
122 |
cat |
124 |
Q |
| |
|
||| |
|
|
| T |
1844915 |
cat |
1844913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 1855362 - 1855398
Alignment:
| Q |
286 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1855362 |
ccgaaaaagcaaataaaccttctctcagagtttcttc |
1855398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 37566744 - 37566845
Alignment:
| Q |
135 |
tttatgctcaattgtacagacaattccaaattaatttatggtaagaatatacaagtcctagacataaatccccaaggtcaaatggaaatgagatttttcg |
234 |
Q |
| |
|
|||| ||||| ||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
37566744 |
tttaagctcacttgtacaaacaactccaaattaatccgtggtaagaatctacaagtcctagacataaatccgcacggtcaaatggaaatgaaatttttcg |
37566843 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
37566844 |
tc |
37566845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University