View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_1 (Length: 640)
Name: NF12839_high_1
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Original strand, 10012315 - 10012920
Alignment:
| Q |
20 |
gtttgatgaatgaatggtctaataatgtgagcatagggagaaaaatataactagtgtgtagctagggaggaatttgattaaagcattgtgttttgactta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012315 |
gtttgatgaatgaatggtctaataatgtgagcatagggagaaaaatataactagtgtgtagctagggaggaatttgattaaagcattgtgttttgactta |
10012414 |
T |
|
| Q |
120 |
acacttcagaaccagttaaaagccttatttcactatgttataaaaatgaggagcacttttgtcagatataaagtatataggttctatgtacctataaaat |
219 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012415 |
acacttcagaaccagttaaaagccttttttcactatgttataaaaatgaggagcacttttgtcagatataaagtatataggttctatgtacctataaaat |
10012514 |
T |
|
| Q |
220 |
tccaataggaagaggacataaagtaatgatataactttcttgtggagggaaagaagagtgtaatatgtggtagagaactttattcattggagaagggaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012515 |
tccaataggaagaggacataaagtaatgatataactttcttgtggagggaaagaagagtgtaatatgtggtagagaactttattcattggagaagggaag |
10012614 |
T |
|
| Q |
320 |
agtcacataattggctaaatgccttcatgaataccatcaaagaatcaaattaggacgggtggcttttacgcaatccaactttgagcatattttctatcgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
10012615 |
agtcacataattggctaaatgccttcatgaataccatcaaagaatcaaattaggacgggtggcttttatgcaatccaacttggagcatattttctatcgc |
10012714 |
T |
|
| Q |
420 |
ggtagatttgtcaaaatcatggtggcagcgttattttgttgaagtctaaagtgtagcttttgacaaaatcacggtggcacatcgtgattttgttaaactc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012715 |
ggtagatttgtcaaaatcatggtggcagcgttattttgttgaagtccaaagtgtagcttttgacaaaatcacggtggcacatcgtgattttgttaaactc |
10012814 |
T |
|
| Q |
520 |
accgtccgttcaaattaaggagagggtgttggcgcggtggtgtgtccatgatacgaagcagtggacgagtagagtaagacatcttgaagtgatagctacg |
619 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012815 |
actgtcagttcaaattaaggagagggtgttggcgcggtggtgtggccatggtacgaagcagtggacgagtagagtaagacatcttgaagtgatagctacg |
10012914 |
T |
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| Q |
620 |
tctgtg |
625 |
Q |
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|||||| |
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| T |
10012915 |
tctgtg |
10012920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 42171691 - 42171832
Alignment:
| Q |
20 |
gtttgatgaatgaatggtctaataatgtgagcatagggagaaaa-atataactagtgtgtagctagggaggaatttgattaaagcattgtgttttgactt |
118 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42171691 |
gtttgatgaatgaatgggctaataatgtgagcatagggagaaaagatagaactagtgtgtagctagggaggaatttgattaaagcattgtgttttgactt |
42171790 |
T |
|
| Q |
119 |
aacacttcagaaccagttaaaagccttatttcactatgttat |
160 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |
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| T |
42171791 |
aacacttcagaaccagttaaaagcctattttcattatgttat |
42171832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 10341311 - 10341268
Alignment:
| Q |
467 |
aaagtgtagcttttgacaaaatcacggtggcacatcgtgatttt |
510 |
Q |
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| T |
10341311 |
aaagtgtagcttttgtcaaaatcacggtggcacatcgtgatttt |
10341268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 511
Target Start/End: Original strand, 6011216 - 6011275
Alignment:
| Q |
452 |
attttgttgaagtctaaagtgtagcttttgacaaaatcacggtggcacatcgtgattttg |
511 |
Q |
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|||||||||||| |||| |||||||||||||||||||| ||||| ||| | |||||||| |
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| T |
6011216 |
attttgttgaagcttaaactgtagcttttgacaaaatcagggtgggacaccatgattttg |
6011275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 425 - 508
Target Start/End: Complemental strand, 25719802 - 25719720
Alignment:
| Q |
425 |
atttgtcaaaatcatggtggcagcgttattttgttgaag-tctaaagtgtagcttttgacaaaatcacggtggcacatcgtgatt |
508 |
Q |
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||||| |||||||||| ||| | ||| |||||||||||| ||||||||||||||||| |||||||||||| || ||| |||||| |
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| T |
25719802 |
atttgccaaaatcatgatggtaccgtgattttgttgaagctctaaagtgtagctttt--caaaatcacggtagctcattgtgatt |
25719720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 44279082 - 44279118
Alignment:
| Q |
472 |
gtagcttttgacaaaatcacggtggcacatcgtgatt |
508 |
Q |
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|||||||||| |||||||||||||||||| ||||||| |
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| T |
44279082 |
gtagcttttgtcaaaatcacggtggcacaccgtgatt |
44279118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 35027503 - 35027568
Alignment:
| Q |
426 |
tttgtcaaaatcatggtggcagcgttattttgttgaag-tctaaagtgtagcttttgacaaaatca |
490 |
Q |
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||||||||||||| ||||| | ||| |||||||||||| ||| ||||||||||||| |||||||| |
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| T |
35027503 |
tttgtcaaaatcaaggtggtaccgtaattttgttgaagctctgaagtgtagcttttatcaaaatca |
35027568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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