View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_15 (Length: 254)
Name: NF12839_high_15
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 37831733 - 37831498
Alignment:
| Q |
11 |
gaaacagccaagaacaaaatccatttaaatgatatggatgtaactgttgttttcagtgtggtagtaaccaaagttgtggacaaagctatctatcaagtta |
110 |
Q |
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| T |
37831733 |
gaaacagccaagaacaaaaaccattgaaatgatatggatgtaactgttgttttcagtgtgttagtaaccaaagttgtggacaaagctatatatcaagtta |
37831634 |
T |
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| Q |
111 |
agagttttggatttgaagttcattcacgagtgaag---------caaatgaacttgtactatgagatacaaatgccacataaattccatggctggattgc |
201 |
Q |
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| T |
37831633 |
agagttttggatttgaagttcattcacgagtgaagcaaaaactgcaaatgaacttgtactatgagatacaaatgccacataaattccatggctggattgc |
37831534 |
T |
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| Q |
202 |
tcaacaatttttactttttcaggatgtagtatatta |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
37831533 |
tcaacaatttttactttttcaggatgtagtatatta |
37831498 |
T |
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