View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_16 (Length: 250)
Name: NF12839_high_16
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 30228291 - 30228106
Alignment:
| Q |
67 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacac-- |
164 |
Q |
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| T |
30228291 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat |
30228192 |
T |
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| Q |
165 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttctcggcgaggggtgtag |
250 |
Q |
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| T |
30228191 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaaccaacaatgatatacaatttctcggcgaggggtgtag |
30228106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 34687915 - 34687712
Alignment:
| Q |
18 |
gttagattctttggaattcattgtagttgcgaaacatacatacaactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagt |
117 |
Q |
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| T |
34687915 |
gttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattcaatattaattcaaagt |
34687816 |
T |
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| Q |
118 |
actttcaatcaagatgaggaatttcaatgaggagaggaattttacacatacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaatcaa |
217 |
Q |
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| T |
34687815 |
actttcaatgaatatgaggaatttcaatgagaagaggaattttacaca------------atcaatcatataagaaagaaatttcttaatctcaaatcaa |
34687728 |
T |
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| Q |
218 |
caatgatatacaattt |
233 |
Q |
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| T |
34687727 |
caatgatatacaattt |
34687712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 26985856 - 26985663
Alignment:
| Q |
18 |
gttagattctttggaattcattgtagttgcgaaacatacatacaactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagt |
117 |
Q |
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| T |
26985856 |
gttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattcaatattaattcaaagt |
26985757 |
T |
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| Q |
118 |
actttcaatcaagatgaggaatttcaatgaggagaggaattttacacatacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaatcaa |
217 |
Q |
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| T |
26985756 |
agtttcaatgaatatgaggaatttcaatgagaagaggaa----------------------tcaatcatataagaaagaaatttcttaatctcaaatcaa |
26985679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 27079514 - 27079641
Alignment:
| Q |
18 |
gttagattctttggaattcattgtagttgcgaaacatacatacaactttaattaattcatgggataaactatcagatgaaattcagtattaattcaaagt |
117 |
Q |
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| T |
27079514 |
gttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaattcatgggataaactatcaaatgaaattcaatattaattcaaagt |
27079613 |
T |
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| Q |
118 |
actttcaatcaagatgaggaatttcaat |
145 |
Q |
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| T |
27079614 |
actttcaatgaagagaaggattttcaat |
27079641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 27025691 - 27025601
Alignment:
| Q |
18 |
gttagattctttggaattcattgtagttgcgaaacatacatacaactttaattaattcatgggataaactatcagatgaaattcagtatta |
108 |
Q |
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| T |
27025691 |
gttagattcgttggaattaatcgtagttggctaacatacagccaactttaattaattcatgggctaaactgtcaaatgaaattcaatatta |
27025601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 27025518 - 27025475
Alignment:
| Q |
203 |
ttaatctcaaatcaacaatgatatacaatttctcggcgaggggt |
246 |
Q |
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| T |
27025518 |
ttaatctcaaatcaacaatgatatacaatttctcggtgaggggt |
27025475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 27079689 - 27079727
Alignment:
| Q |
197 |
aatttcttaatctcaaatcaacaatgatatacaatttct |
235 |
Q |
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| T |
27079689 |
aatttcttaatctcaaatcattaatgatatacaatttct |
27079727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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