View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_18 (Length: 249)
Name: NF12839_high_18
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 30227883 - 30228116
Alignment:
| Q |
11 |
aagaaaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatcaacaaatttcgtattcaagagtttatattatagtcatag |
110 |
Q |
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| T |
30227883 |
aagaaaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatcaacaaatttcgtattcaagagtttat-----agtcatag |
30227977 |
T |
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| Q |
111 |
tgtttctgtaacatatgcagtcctttaaatttatattgatttttactttgcgaaattttcgattgataagattttggaccgttctaatgggtaacaattt |
210 |
Q |
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| T |
30227978 |
tgtttctctaacatatgcagtcctttaaatttatattgatttttactttgcgaaattttcgattggtaagattttggaccgttctaatgggtaacaattt |
30228077 |
T |
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| Q |
211 |
agttacttcattgatcgagtattccatactacacccctc |
249 |
Q |
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| T |
30228078 |
agttacttcatcgatcgagtattccatactacacccctc |
30228116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 26985446 - 26985652
Alignment:
| Q |
11 |
aagaaaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatcaacaaatttcgtattcaagagtttatattatagtcatag |
110 |
Q |
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| T |
26985446 |
aagaaaagcaatctttggaatttggtgatcctctacgagtaaaggtattatgcgaagaattaacaaatttcatatttaagagtattcatt-----catag |
26985540 |
T |
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| Q |
111 |
tgtttctgtaacatatgcagtcctttaaatttatattgatttttactt-tgcgaaattttcgattgataagattttggaccgttctaatgggtaacaatt |
209 |
Q |
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| T |
26985541 |
tgtttctgtaacatatgcagtcctttaaatttatattgatttttacttctgcgaatgtttcgattgataagattttggaccgttctaatgggtaacaatt |
26985640 |
T |
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| Q |
210 |
tagttacttcat |
221 |
Q |
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| T |
26985641 |
tagttacttcat |
26985652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 27025366 - 27025422
Alignment:
| Q |
15 |
aaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatc |
71 |
Q |
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| T |
27025366 |
aaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatc |
27025422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 27079996 - 27079863
Alignment:
| Q |
11 |
aagaaaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatcaacaaatttcgtattcaagagtttatattatagtcatag |
110 |
Q |
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| T |
27079996 |
aagagaagcaatctttggaatttcgtgatccact--gagtaaagg---tatgggaagaattaacaaattttatatttaagagt-----ctatagtcatac |
27079907 |
T |
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| Q |
111 |
tgtttctgtaacatatgcagtcctttaaatttatattgattttt |
154 |
Q |
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| T |
27079906 |
tgtttctatagcacatacagtgctttaaatttatattgattttt |
27079863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 34687495 - 34687701
Alignment:
| Q |
11 |
aagaaaagcaatctttggaatttggtgatcctctaagagtaaaggtattatgcgaagaatcaacaaatttcgtattcaagagtttatattatagtcatag |
110 |
Q |
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| T |
34687495 |
aagaaaagcaatctttggaatttggtgatcctctacgagtaaaggtattatgcgaagaattaacaaatttcatatttaagagtattcatt-----catag |
34687589 |
T |
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| Q |
111 |
tgtttctgtaacatatgcagtcctttaaatttatattgatttttactt-tgcgaaattttcgattgataagattttggaccgttctaatgggtaacaatt |
209 |
Q |
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| T |
34687590 |
tgtttctgtaacatatgcagtcctttaaatttatattgatttttacttctgcgaatgtttcgattgataagattttggacgtttctaatgggtaacaatt |
34687689 |
T |
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| Q |
210 |
tagttacttcat |
221 |
Q |
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| T |
34687690 |
tagttacttcat |
34687701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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