View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_23 (Length: 207)
Name: NF12839_high_23
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 2357062 - 2357244
Alignment:
| Q |
15 |
cacagaactataatatattttcagcaagtg---tctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgt |
111 |
Q |
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| T |
2357062 |
cacagaactataatatattttcagcaatctcactctacatcatcatggcatacttcttaatttgtgtgctccaaattctcttacagttacaacatcctgt |
2357161 |
T |
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| Q |
112 |
tactatttttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
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| T |
2357162 |
tactatttttccaatctcactcatactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
2357244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 2089149 - 2089323
Alignment:
| Q |
29 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactac--aac-------atcctgttactattt |
119 |
Q |
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| T |
2089149 |
atatattctgcaagtgtctacatgattatggcattcttcttagtttgggtgctccaaactctcttacaacaacctatctctagtgattttgttagtattt |
2089248 |
T |
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| Q |
120 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
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| T |
2089249 |
ttccaatctcactcttactcatgttggggtatgctgtgtcctttttagccttgacactgatttcacggaacattg |
2089323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 1559287 - 1559445
Alignment:
| Q |
20 |
aactataatatattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttactattt |
119 |
Q |
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| T |
1559287 |
aactatactttattttcagcaagtgtctacatcattatggcatacttcttagtttgtctgctccaaa------tg----------attctgttagtattt |
1559370 |
T |
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| Q |
120 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
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| T |
1559371 |
tccaaatctcactcttactcttgttggggtatgctttgtcctttttagccttgacactgatttcactgaacattg |
1559445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 2073499 - 2073341
Alignment:
| Q |
29 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttac---tatttttccaa |
125 |
Q |
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| T |
2073499 |
atatattctgcaagtgtctacatgattatggcatacttcttagtttgggtgctccaaactctcttacaacaacctattcctaattctggtcttttcccta |
2073400 |
T |
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| Q |
126 |
tctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttca |
184 |
Q |
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| T |
2073399 |
tctcactcttgctctcgttggggtgtgctgtttcttttttagcgttgacactgatttca |
2073341 |
T |
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