View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12839_high_4 (Length: 459)

Name: NF12839_high_4
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12839_high_4
NF12839_high_4
[»] chr2 (23 HSPs)
chr2 (167-436)||(386981-387250)
chr2 (19-136)||(386863-386980)
chr2 (314-439)||(39338866-39338992)
chr2 (314-439)||(10524051-10524181)
chr2 (346-444)||(7874278-7874376)
chr2 (358-444)||(14405197-14405283)
chr2 (341-411)||(14106553-14106623)
chr2 (366-438)||(1269490-1269562)
chr2 (371-439)||(4471935-4472003)
chr2 (371-438)||(22885135-22885202)
chr2 (366-439)||(16959989-16960062)
chr2 (371-437)||(13337286-13337352)
chr2 (370-439)||(2062900-2062969)
chr2 (359-444)||(10173574-10173659)
chr2 (371-439)||(15126411-15126479)
chr2 (358-418)||(37770663-37770723)
chr2 (371-434)||(36276178-36276240)
chr2 (371-408)||(4162052-4162089)
chr2 (358-418)||(23650384-23650444)
chr2 (371-411)||(27739987-27740027)
chr2 (371-419)||(33788653-33788701)
chr2 (366-444)||(5254263-5254341)
chr2 (381-439)||(7695985-7696043)
[»] chr1 (27 HSPs)
chr1 (314-439)||(41920407-41920532)
chr1 (314-439)||(31585761-31585887)
chr1 (314-439)||(30685905-30686031)
chr1 (314-439)||(46692820-46692946)
chr1 (314-439)||(5389422-5389548)
chr1 (351-439)||(5459153-5459241)
chr1 (341-437)||(7857635-7857731)
chr1 (315-438)||(24449932-24450056)
chr1 (346-444)||(46814463-46814561)
chr1 (346-439)||(24658916-24659009)
chr1 (315-438)||(20113523-20113647)
chr1 (321-444)||(24684474-24684598)
chr1 (346-434)||(27031846-27031934)
chr1 (371-438)||(19598648-19598715)
chr1 (358-419)||(6583237-6583298)
chr1 (358-428)||(17033585-17033655)
chr1 (358-419)||(9313310-9313371)
chr1 (378-439)||(27102210-27102271)
chr1 (358-439)||(32864562-32864643)
chr1 (371-419)||(38544759-38544807)
chr1 (371-428)||(15840924-15840981)
chr1 (371-420)||(22200020-22200069)
chr1 (358-411)||(34774870-34774922)
chr1 (374-434)||(2877652-2877711)
chr1 (371-411)||(4651792-4651832)
chr1 (381-420)||(22239699-22239738)
chr1 (371-411)||(30655572-30655612)
[»] chr8 (22 HSPs)
chr8 (314-439)||(24995396-24995522)
chr8 (314-439)||(34389006-34389132)
chr8 (314-438)||(31207364-31207488)
chr8 (314-439)||(9519453-9519579)
chr8 (314-444)||(36630791-36630922)
chr8 (314-436)||(37986862-37986985)
chr8 (314-439)||(32066296-32066422)
chr8 (341-435)||(16457466-16457559)
chr8 (341-444)||(15821375-15821478)
chr8 (314-428)||(10248565-10248680)
chr8 (314-437)||(17657005-17657128)
chr8 (376-439)||(32945704-32945767)
chr8 (371-439)||(15906698-15906766)
chr8 (371-439)||(41893402-41893469)
chr8 (381-439)||(20138448-20138506)
chr8 (371-439)||(30236129-30236197)
chr8 (356-439)||(12898275-12898358)
chr8 (358-416)||(10552267-10552325)
chr8 (371-422)||(33967338-33967389)
chr8 (371-428)||(12198081-12198138)
chr8 (371-428)||(12442509-12442566)
chr8 (371-408)||(40531244-40531281)
[»] chr7 (34 HSPs)
chr7 (314-439)||(3419657-3419783)
chr7 (314-439)||(38306215-38306341)
chr7 (317-446)||(3867073-3867203)
chr7 (314-439)||(47325886-47326012)
chr7 (314-437)||(10244136-10244260)
chr7 (313-439)||(5860289-5860416)
chr7 (314-436)||(41089752-41089875)
chr7 (341-444)||(6584891-6584994)
chr7 (321-444)||(33435070-33435194)
chr7 (341-439)||(37794971-37795069)
chr7 (351-439)||(34389954-34390042)
chr7 (315-439)||(25160770-25160895)
chr7 (341-444)||(35745823-35745926)
chr7 (358-428)||(1320793-1320863)
chr7 (374-428)||(24324810-24324864)
chr7 (358-428)||(42533264-42533334)
chr7 (371-428)||(6716748-6716805)
chr7 (371-416)||(9349761-9349806)
chr7 (371-428)||(13311851-13311908)
chr7 (359-426)||(3478352-3478419)
chr7 (317-439)||(8745110-8745233)
chr7 (381-439)||(44353565-44353623)
chr7 (374-437)||(12480901-12480965)
chr7 (371-411)||(38485568-38485608)
chr7 (358-428)||(16828948-16829018)
chr7 (358-428)||(16954652-16954722)
chr7 (314-396)||(44755581-44755663)
chr7 (371-408)||(46262151-46262188)
chr7 (371-438)||(23983207-23983274)
chr7 (371-405)||(17802851-17802885)
chr7 (358-439)||(46133278-46133360)
chr7 (371-428)||(11379139-11379196)
chr7 (371-408)||(27993568-27993605)
chr7 (371-408)||(35206725-35206762)
[»] chr4 (26 HSPs)
chr4 (314-439)||(8254981-8255107)
chr4 (314-439)||(8268399-8268525)
chr4 (314-438)||(30964395-30964520)
chr4 (314-435)||(4305679-4305801)
chr4 (358-439)||(25753171-25753252)
chr4 (371-434)||(38637238-38637301)
chr4 (376-438)||(30167566-30167628)
chr4 (371-424)||(40813797-40813850)
chr4 (358-438)||(53823423-53823503)
chr4 (352-439)||(2825776-2825863)
chr4 (341-444)||(31050658-31050761)
chr4 (358-428)||(22811172-22811242)
chr4 (373-415)||(39421038-39421080)
chr4 (371-439)||(38929839-38929907)
chr4 (371-430)||(36962626-36962684)
chr4 (371-429)||(39041285-39041343)
chr4 (371-428)||(6599957-6600014)
chr4 (371-428)||(21387216-21387273)
chr4 (371-428)||(46698797-46698854)
chr4 (358-418)||(49747526-49747586)
chr4 (371-405)||(53756768-53756802)
chr4 (366-419)||(2061759-2061812)
chr4 (379-428)||(2792286-2792335)
chr4 (374-411)||(16501746-16501783)
chr4 (371-411)||(24740132-24740172)
chr4 (371-403)||(37707392-37707424)
[»] chr3 (28 HSPs)
chr3 (346-444)||(19176489-19176587)
chr3 (314-439)||(20611737-20611863)
chr3 (371-439)||(17550969-17551037)
chr3 (356-436)||(43012372-43012452)
chr3 (346-444)||(9584049-9584147)
chr3 (315-439)||(2392507-2392632)
chr3 (315-439)||(34475755-34475880)
chr3 (315-438)||(2394255-2394379)
chr3 (346-444)||(40023568-40023666)
chr3 (366-419)||(14755286-14755339)
chr3 (341-444)||(45398778-45398881)
chr3 (341-439)||(45163835-45163935)
chr3 (366-439)||(47945713-47945786)
chr3 (341-436)||(23328354-23328449)
chr3 (366-410)||(14879442-14879486)
chr3 (358-428)||(14193939-14194009)
chr3 (371-428)||(30127274-30127332)
chr3 (371-428)||(5556582-5556639)
chr3 (371-408)||(20710740-20710777)
chr3 (371-439)||(33143949-33144018)
chr3 (374-419)||(37123397-37123442)
chr3 (374-419)||(39021297-39021342)
chr3 (347-439)||(1652887-1652979)
chr3 (355-439)||(31482880-31482964)
chr3 (371-428)||(2782081-2782138)
chr3 (390-439)||(47235729-47235778)
chr3 (371-407)||(24099360-24099396)
chr3 (371-427)||(31424248-31424304)
[»] chr5 (18 HSPs)
chr5 (351-439)||(34378090-34378178)
chr5 (314-439)||(698315-698441)
chr5 (314-439)||(18593197-18593323)
chr5 (358-439)||(13954235-13954316)
chr5 (371-428)||(7195251-7195308)
chr5 (358-419)||(7392052-7392113)
chr5 (366-439)||(22675325-22675398)
chr5 (346-419)||(33258903-33258976)
chr5 (371-419)||(39184208-39184256)
chr5 (374-424)||(21402853-21402903)
chr5 (371-439)||(27713081-27713149)
chr5 (359-418)||(25992007-25992066)
chr5 (404-438)||(7162319-7162353)
chr5 (359-409)||(26045995-26046045)
chr5 (374-407)||(12046270-12046303)
chr5 (389-437)||(8297498-8297546)
chr5 (359-419)||(14302451-14302511)
chr5 (371-439)||(23426356-23426424)
[»] chr6 (14 HSPs)
chr6 (314-439)||(3117447-3117573)
chr6 (317-437)||(16510304-16510425)
chr6 (358-437)||(32935342-32935421)
chr6 (371-417)||(26216042-26216088)
chr6 (344-417)||(26534742-26534815)
chr6 (360-419)||(9224042-9224101)
chr6 (374-425)||(34105428-34105479)
chr6 (373-439)||(20701804-20701870)
chr6 (371-428)||(34092807-34092864)
chr6 (314-397)||(3880626-3880710)
chr6 (358-409)||(21266112-21266163)
chr6 (375-428)||(13423482-13423535)
chr6 (346-417)||(12794101-12794173)
chr6 (371-411)||(34090375-34090415)
[»] scaffold0068 (1 HSPs)
scaffold0068 (315-439)||(35773-35897)
[»] scaffold0200 (1 HSPs)
scaffold0200 (358-439)||(19382-19463)
[»] scaffold0119 (1 HSPs)
scaffold0119 (366-438)||(42140-42212)
[»] scaffold0063 (1 HSPs)
scaffold0063 (358-428)||(58126-58196)
[»] scaffold0050 (1 HSPs)
scaffold0050 (358-425)||(36706-36773)
[»] scaffold1613 (1 HSPs)
scaffold1613 (371-419)||(1038-1086)
[»] scaffold0620 (2 HSPs)
scaffold0620 (371-425)||(3842-3896)
scaffold0620 (371-428)||(8141-8198)
[»] scaffold0343 (1 HSPs)
scaffold0343 (401-439)||(5747-5785)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 167 - 436
Target Start/End: Original strand, 386981 - 387250
Alignment:
Q  167 taattaagggacaatgtagcatattgtttggcatggaaactttctaatgatggagtcaattcaatttagcttctgcttatgaggcaattacttaaaagat 266  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  386981 taattaagggacaatgtagcagattgtttggcatggaaactttctaatgatggagtcaattcaatttagcttctgcttatgaggcaattacttaaaagat 387080  T
Q  267 atgaggtccatctctttaagaaacttgtccttgctctacaaatgctaatttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtac 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  387081 atgaggtccatctctttaagaaacttgtccttgctctacaaatgctaatttggtttttctctggtacaccggggcgaggggtgccctgctaatttggtac 387180  T
Q  367 taacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttg 436  Q
    ||| ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  387181 taaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 386863 - 386980
Alignment:
Q  19 gctttatctttaacatttataaataacatactgctagtgtgaaacctgctttagaatgccatacgatttgtctataatagcatatttggagtgttggaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  386863 gctttatctttaacatttataaataacatactgctagtgtgaaacctgctttagaatgccatacgatttgtctataatagcatatttggagtgttggaag 386962  T
Q  119 cggaggaattgtgccacc 136  Q
    ||||||||||||||||||    
T  386963 cggaggaattgtgccacc 386980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 39338992 - 39338866
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||| ||||  ||||||  |||| |||| ||||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||     
T  39338992 atttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcag 39338893  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  39338892 ttctttgactcaagttggtttttgggc 39338866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 10524051 - 10524181
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca- 411  Q
    ||||||||||||||||||  || |||  ||||||||| ||||| |||||||| |||  ||||||||||||||||||||||||||| |||||||||||||     
T  10524051 atttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaa 10524150  T
Q  412 ---attctttgactcaagttggtttttgggc 439  Q
       ||||||||||||||||||||||||||||    
T  10524151 tatattctttgactcaagttggtttttgggc 10524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 444
Target Start/End: Original strand, 7874278 - 7874376
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||||| ||||||| |||| |||||||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| ||||    
T  7874278 ggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttttg 7874376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 358 - 444
Target Start/End: Original strand, 14405197 - 14405283
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  |||||| ||||||||||||||||||| ||||    
T  14405197 atttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggcttttg 14405283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 14106623 - 14106553
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||| |||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  14106623 cgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtca 14106553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 438
Target Start/End: Original strand, 1269490 - 1269562
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | |||||||    
T  1269490 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 4471935 - 4472003
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||| | |||||||| ||||||||||||| |||||||| ||||||| ||||||||||    
T  4471935 gtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggc 4472003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 22885202 - 22885135
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||| | |||||||    
T  22885202 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 16959989 - 16960062
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| |||||||||||||||| |||||||||| |||||| |||||| ||||||| |||||||| | ||||||||    
T  16959989 ctaaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggc 16960062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 13337286 - 13337352
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgg 437  Q
    ||||| ||||||||||||||||||||| | ||||| ||||| |||||||||||||||| | ||||||    
T  13337286 gtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 2062900 - 2062969
Alignment:
Q  370 cgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||  |||||||||| |||||||||||||  |||||| |||||||| | ||||||||    
T  2062900 cgtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 2062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 10173659 - 10173574
Alignment:
Q  359 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||| ||| | || |||| |||||||| | |||||||| ||||    
T  10173659 tttggtcctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttg 10173574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 15126479 - 15126411
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||| |||| ||| | ||||||||    
T  15126479 gtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggc 15126411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 37770723 - 37770663
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattcttt 418  Q
    ||||||| |||| || ||||||||||||||||||||||||  |||| ||||||||||||||    
T  37770723 atttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattcttt 37770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 36276240 - 36276178
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 434  Q
    ||||||||||| | || |||||||||| |||||||||||||| ||||||||||||||| |||||    
T  36276240 gtctggtgggctgttcgcttttgattcgagatcgggagtcaa-tctttgactcaagtttgtttt 36276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 4162089 - 4162052
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  4162089 gtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattcttt 418  Q
    ||||||| |||  ||||||||||| |||| |||||||||| ||||||||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 27739987 - 27740027
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  27739987 gtctggtgggccgatcgcttttgattcaagatcgagagtca 27740027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 33788701 - 33788653
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||||||| |||||||||| |||| |||||||| |||||||    
T  33788701 gtctggtgggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 444
Target Start/End: Original strand, 5254263 - 5254341
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||| ||||||||||||||||| |||  ||||||||||||   ||||||  ||||||||||||| |||| ||||    
T  5254263 ctaaagtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggcttttg 5254341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 7695985 - 7696043
Alignment:
Q  381 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||| | | ||||||||| ||||||| |||||||| | ||||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggc 7696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 41920407 - 41920532
Alignment:
Q  314 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    ||||||||||||||||||  || ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |    
T  41920407 atttggtttttctctggtgtactggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagt 41920506  T
Q  414 tctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||| ||||||||    
T  41920507 tctttgactcaagttggattttgggc 41920532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 31585887 - 31585761
Alignment:
Q  314 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  || | ||  ||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  31585887 atttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 31585788  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  31585787 ttctttgactcaagttggtttttgggc 31585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 30686031 - 30685905
Alignment:
Q  314 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||  |||||||||||||     
T  30686031 atttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcag 30685932  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||| ||||||||    
T  30685931 ttctttgactcaagttggcttttgggc 30685905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 46692946 - 46692820
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||| ||||||||||||  ||||||  ||||||||| ||||||||||||||  ||  ||||||||||||||||||||||||||| ||||||||||| |     
T  46692946 atttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttag 46692847  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    ||||||| |||||||||||||||||||    
T  46692846 ttctttggctcaagttggtttttgggc 46692820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 5389548 - 5389422
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||| ||||||||||||  ||||||  |||| |||| || |||||||||||||||  |||||  |||||||||||||||||||| |||||||||||||     
T  5389548 atttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcag 5389449  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||| ||||||||||    
T  5389448 ttctttgactcaagtttgtttttgggc 5389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 5459153 - 5459241
Alignment:
Q  351 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||    
T  5459153 cctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttgatttttgggc 5459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 437
Target Start/End: Original strand, 7857635 - 7857731
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgg 437  Q
    |||| |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||  || ||||||||||||||    
T  7857635 cgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgctgaagttggtttttgg 7857731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 24450056 - 24449932
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    |||||||||||||||||  ||||||  |||| |||| ||||||| ||||||||||  || |||||||||||||||||||||||  ||||||| ||||| |    
T  24450056 tttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagt 24449957  T
Q  414 tctttgactcaagttggtttttggg 438  Q
    |||||| || |||||||||||||||    
T  24449956 tctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 46814561 - 46814463
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  | |||| ||||||||||||||| ||| ||||    
T  46814561 ggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggcttttg 46814463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 24658916 - 24659009
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| |||||| ||||||| |||| |||||||||||| |||||||||||||| |||||||||||||  |||||| || ||||||||||||||||    
T  24658916 ggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggc 24659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 20113647 - 20113523
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    ||||||||||||| |||  ||||||  |||| |||| ||||||||||||||| ||  ||||| |||| |||||| ||||||||||||||||||| ||| |    
T  20113647 tttggtttttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagt 20113548  T
Q  414 tctttgactcaagttggtttttggg 438  Q
    ||||| ||| |||||||||||||||    
T  20113547 tctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 444
Target Start/End: Complemental strand, 24684598 - 24684474
Alignment:
Q  321 ttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||  ||||||  |||| |||| ||| |||||||| | |||| |||||||||||||||||||||| |||| |||||||  |||| |||||||    
T  24684598 ttttctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttg 24684499  T
Q  420 actcaagttggtttttgggcctttg 444  Q
    |||| ||||||||||||||| ||||    
T  24684498 actctagttggtttttgggcttttg 24684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 346 - 434
Target Start/End: Complemental strand, 27031934 - 27031846
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 434  Q
    |||| |||||| ||||||| |||| |||| |||||||||||||||||||||| |||||| ||||||  |||||| ||||||||||||||    
T  27031934 ggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggctcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 19598648 - 19598715
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||||||||||||||| |||||||||| |||||| |||||| |||||||||||||||| | |||||||    
T  19598648 gtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 6583298 - 6583237
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 17033585 - 17033655
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||  |||||||||||||||||||||||| || ||||||||||||| |||||||  |||||||    
T  17033585 atttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 9313371 - 9313310
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    ||||||| |||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||    
T  9313371 atttggtcctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 27102210 - 27102271
Alignment:
Q  378 gggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||| ||||||||||||| |||||||  ||||||| | ||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggc 27102271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 32864643 - 32864562
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||| |||| | |||||||||| ||||||||| |||| ||||||| ||||  |||||||||||||||| | ||||||||    
T  32864643 atttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggc 32864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 38544807 - 38544759
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  38544807 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 15840981 - 15840924
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||  |||| |||||||    
T  15840981 gtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 22200020 - 22200069
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttga 420  Q
    ||||| ||| |||||||||||||||||||||||| |||||||| ||||||    
T  22200020 gtctgatggaccgatcacttttgattcaagatcgagagtcaatgctttga 22200069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 34774870 - 34774922
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    ||||||| |||||||||||||| |||||||||||||| || |||||||||||||    
T  34774870 atttggtcctaacgtctggtggaccgatcacttttga-tcgagatcgggagtca 34774922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 2877652 - 2877711
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 434  Q
    ||||||||||||| | ||||||||||||| ||||| | | |||||||||||||||||||||    
T  2877652 tggtgggccgatcgcatttgattcaagattgggag-ccagtctttgactcaagttggtttt 2877711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 4651792 - 4651832
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  4651792 gtctggggggccgatcacttttgattcgagatcgggagtca 4651832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 22239699 - 22239738
Alignment:
Q  381 ccgatcacttttgattcaagatcgggagtcaattctttga 420  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  22239699 ccgatcacttttgattcaagatcgagagtcaatgctttga 22239738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 30655572 - 30655612
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  30655572 gtctagtgggccgatcgcttttgattcgagatcgggagtca 30655612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 24995522 - 24995396
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  || |||  |||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  24995522 atttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 24995423  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  24995422 ttctttgactcaagttggtttttgggc 24995396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 34389132 - 34389006
Alignment:
Q  314 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||  ||||||     
T  34389132 atttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcag 34389033  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  34389032 ttctttgactcaagttggtttttgggc 34389006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 314 - 438
Target Start/End: Complemental strand, 31207488 - 31207364
Alignment:
Q  314 atttggtttttctctggtacacc-gggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||| ||| |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||     
T  31207488 atttggtttttctctggtgtaccaggggcgag-ggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcag 31207390  T
Q  413 ttctttgactcaagttggtttttggg 438  Q
    |||||||||||||||||| |||||||    
T  31207389 ttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 9519453 - 9519579
Alignment:
Q  314 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||   ||| |||| ||||||||||||||||||  |||| |||||||||||| ||||||||| |||||||||||||     
T  9519453 atttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcag 9519552  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  9519553 ttctttgactcaagttggtttttgggc 9519579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 444
Target Start/End: Original strand, 36630791 - 36630922
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||| ||||  ||||||  |||| |||| |||||||||||||| |||| |||||||||||||||||||||| |||| |||||||| ||||     
T  36630791 atttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcag 36630890  T
Q  413 ttctttgactcaagttggtttttgggcctttg 444  Q
    ||||||||||| |||| |||||||||| ||||    
T  36630891 ttctttgactctagtttgtttttgggcttttg 36630922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 37986985 - 37986862
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||  ||  |||||||||||| |||| ||||||||| |||||||||||||     
T  37986985 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcag 37986886  T
Q  413 ttctttgactcaagttggtttttg 436  Q
    ||||||||||||||||||||||||    
T  37986885 ttctttgactcaagttggtttttg 37986862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 32066422 - 32066296
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||| ||  ||||||  |||| |||| |||||||||||||| |||  ||||||||||||||||||||||||||| | |||||||||||     
T  32066422 atttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcag 32066323  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
     |||||||||| |||||||||||||||    
T  32066322 ctctttgactccagttggtttttgggc 32066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 16457559 - 16457466
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggttttt 435  Q
    |||| ||||||||||||||||| |||||  || |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  16457559 cgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggttttt 16457466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 341 - 444
Target Start/End: Complemental strand, 15821478 - 15821375
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcc 440  Q
    |||| |||| |||||| ||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||  ||||||||| | ||||||||||||||     
T  15821478 cgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggct 15821379  T
Q  441 tttg 444  Q
    ||||    
T  15821378 tttg 15821375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 10248680 - 10248565
Alignment:
Q  314 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||| ||||||||||  ||||||   ||| |||||||| ||||||| || ||||  | |||||| |||||||||||||||||||||||||||||||     
T  10248680 atttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcag 10248581  T
Q  413 ttctttgactcaagtt 428  Q
    ||||||| ||||||||    
T  10248580 ttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 437
Target Start/End: Complemental strand, 17657128 - 17657005
Alignment:
Q  314 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    ||||||| |||||||| |  ||||||  ||| |||| ||| |||| ||||  |||| || ||||||| |||||||||||||||| ||||||||||||| |    
T  17657128 atttggtgtttctctgatgtaccgggatgaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagt 17657029  T
Q  414 tctttgactcaagttggtttttgg 437  Q
    |||||| |||||||| | ||||||    
T  17657028 tctttggctcaagtttggttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 32945767 - 32945704
Alignment:
Q  376 gtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||    
T  32945767 gtgggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggc 32945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 15906698 - 15906766
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||  ||||||| | ||||||||    
T  15906698 gtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggc 15906766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 41893469 - 41893402
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  41893469 gtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggc 41893402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 20138448 - 20138506
Alignment:
Q  381 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||  ||||||||||||| |||||||||| | ||||||||||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 20138506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 30236197 - 30236129
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||  ||||||| | ||||||||    
T  30236197 gtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggc 30236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 439
Target Start/End: Complemental strand, 12898358 - 12898275
Alignment:
Q  356 taatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||| ||  ||||||||  ||||||||||||||||| ||||| ||||||| || | | ||||||||||||||| ||||    
T  12898358 taatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttggggc 12898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 10552267 - 10552325
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattct 416  Q
    ||||||| || | |||||||||||||||| |||||||||| ||||||||||||| ||||    
T  10552267 atttggttctgaagtctggtgggccgatcgcttttgattctagatcgggagtcagttct 10552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 33967338 - 33967389
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgact 422  Q
    ||||||||||||||||||||||||||| ||||| |||| ||| | |||||||    
T  33967338 gtctggtgggccgatcacttttgattcgagatcaggagccaactttttgact 33967389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 12198138 - 12198081
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||| |||||||||||| ||| || || |||||||| ||||||| ||||||||    
T  12198138 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtt 12198081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 12442566 - 12442509
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||| |||||||||||| ||| || || |||||||| ||||||| ||||||||    
T  12442566 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtt 12442509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 40531244 - 40531281
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  40531244 gtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 3419783 - 3419657
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||| ||||||  |||| |||| |||| |||||||||||||| || |||||||| ||||||||||||||| |||||||||||||     
T  3419783 atttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcag 3419684  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
     ||||||||||||||||||||||||||    
T  3419683 ctctttgactcaagttggtttttgggc 3419657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 38306215 - 38306341
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  || |||  |||| |||| ||||||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||     
T  38306215 atttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcag 38306314  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  38306315 ttctttgactcaagttggtttttgggc 38306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 317 - 446
Target Start/End: Original strand, 3867073 - 3867203
Alignment:
Q  317 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 415  Q
    |||||||||||||||  |||| || |||  |||| |||||||||||||||||||  | |||||||| ||||||||||||||| ||| ||||||||| |||    
T  3867073 tggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgggagtcagttc 3867172  T
Q  416 tttgactcaagttggtttttgggcctttgct 446  Q
    |||||||||||||||||||||||| ||||||    
T  3867173 tttgactcaagttggtttttgggcttttgct 3867203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 439
Target Start/End: Complemental strand, 47326012 - 47325886
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| | ||||||||||||||||  |||||||||||||||| |||||||||  |||||||||||||     
T  47326012 atttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcag 47325913  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
     ||||||||||||||||||||||||||    
T  47325912 ctctttgactcaagttggtttttgggc 47325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 314 - 437
Target Start/End: Original strand, 10244136 - 10244260
Alignment:
Q  314 atttggtttttctctggtacaccgggcc-gagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||   ||| |||| |||||||||||||| |||   |||||||||||||||||||||||||| |||||||||||||     
T  10244136 atttggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcag 10244235  T
Q  413 ttctttgactcaagttggtttttgg 437  Q
    |||||||||||||||| ||||||||    
T  10244236 ttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 313 - 439
Target Start/End: Complemental strand, 5860416 - 5860289
Alignment:
Q  313 aatttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    ||||||||||||||||  |  ||||||  |||| |||| ||||||||||||||||||  ||| |||||||| ||| |||||||||| |||||||||||||    
T  5860416 aatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtca 5860317  T
Q  412 attctttgactcaagttggtttttgggc 439  Q
    |||||||||| |||||||||||||||||    
T  5860316 attctttgacgcaagttggtttttgggc 5860289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 314 - 436
Target Start/End: Complemental strand, 41089875 - 41089752
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  | ||||  |||| ||||  |||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||     
T  41089875 atttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaaagtctggtggaccgatcacttttgattcgagattgggagtcag 41089776  T
Q  413 ttctttgactcaagttggtttttg 436  Q
     |||||||||||||||||||||||    
T  41089775 ctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 341 - 444
Target Start/End: Original strand, 6584891 - 6584994
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcc 440  Q
    |||| |||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||||||||||||     
T  6584891 cgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 6584990  T
Q  441 tttg 444  Q
    ||||    
T  6584991 tttg 6584994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 444
Target Start/End: Original strand, 33435070 - 33435194
Alignment:
Q  321 ttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||  ||||||  |||| |||| |||| |||||||||||||| |||||||| | |||||||||||||||| ||||||||||||| |||||||    
T  33435070 ttttctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttg 33435169  T
Q  420 actcaagttggtttttgggcctttg 444  Q
     |||||||| |||| ||||| ||||    
T  33435170 tctcaagttcgtttgtgggcatttg 33435194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 439
Target Start/End: Original strand, 37794971 - 37795069
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| |||| ||||||||||||||| ||  || |||||||||| ||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  37794971 cgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggc 37795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 34389954 - 34390042
Alignment:
Q  351 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||||||||||||    
T  34389954 cctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggc 34390042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 439
Target Start/End: Original strand, 25160770 - 25160895
Alignment:
Q  315 tttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    |||||||||||||||||  |||| || |||| |||| |||||||||||||| |||  ||||||||| ||||| ||||||||||| ||||||| ||||||     
T  25160770 tttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcggaagtcaaa 25160869  T
Q  414 tctttgactcaagttggtttttgggc 439  Q
    ||||  | | ||||||||||||||||    
T  25160870 tcttgaaattaagttggtttttgggc 25160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 444
Target Start/End: Complemental strand, 35745926 - 35745823
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcc 440  Q
    |||| |||| ||| ||||||| || |||| ||||| ||||| ||||||||||||||| ||||||| |||||  |||||| |||||||||||||||||||     
T  35745926 cgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggct 35745827  T
Q  441 tttg 444  Q
    ||||    
T  35745826 tttg 35745823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 1320793 - 1320863
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||  ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||||    
T  1320793 atttggtcataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 24324864 - 24324810
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  24324864 tggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 42533334 - 42533264
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| || |||||    
T  42533334 atttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtt 42533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 6716805 - 6716748
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  6716805 gtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 9349761 - 9349806
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattct 416  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  9349761 gtctggtgggccgatcacttttgattcgagatcgggagtcaattct 9349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 13311851 - 13311908
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||    
T  13311851 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 3478352 - 3478419
Alignment:
Q  359 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag 426  Q
    |||||| |||| || |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||    
T  3478352 tttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 439
Target Start/End: Original strand, 8745110 - 8745233
Alignment:
Q  317 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 415  Q
    |||| |||||||||| ||||| ||  ||| |||| ||| || ||||||| ||||  |||||||||||||||||||||||||| ||||||||| ||| |||    
T  8745110 tggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttc 8745209  T
Q  416 tttgactcaagttggtttttgggc 439  Q
     |||  ||||||| | ||||||||    
T  8745210 gttggatcaagtttggttttgggc 8745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 439
Target Start/End: Complemental strand, 44353623 - 44353565
Alignment:
Q  381 ccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||  ||||||||||||| |||||||||| | ||||||||||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 44353565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 12480901 - 12480965
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgg 437  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||  ||||| |||||||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 38485568 - 38485608
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  38485568 gtctggtgggccgatcacttttgattcgagatcgggagtca 38485608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 16829018 - 16828948
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||| ||||||| ||| ||||||||||| ||| ||||||  ||||| ||||||||||||||||    
T  16829018 atttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 16954652 - 16954722
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||| ||||||| | ||||||||||||| ||| ||||||  ||||| ||||||||||||||||    
T  16954652 atttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 44755581 - 44755663
Alignment:
Q  314 atttggtttttctctggtacaccgggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgatt 396  Q
    ||||||| ||||||||||  |||| |  ||| |||| ||| || ||||||| |||| ||||||||||||||||||||||||||    
T  44755581 atttggtgtttctctggtgtaccgtggtgaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 46262188 - 46262151
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  46262188 gtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 23983207 - 23983274
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||||||||| |||||  ||||||||| ||||||||||||||||| ||  |||||||| | |||||||    
T  23983207 gtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttggg 23983274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 17802885 - 17802851
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgg 405  Q
    ||||||||||||||||||||||||||| |||||||    
T  17802885 gtctggtgggccgatcacttttgattcgagatcgg 17802851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 46133360 - 46133278
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgggc 439  Q
    ||||||| || | |||||||| ||||||| |||||||||  ||||||||||||| |||| ||  ||||| |||||||||||||    
T  46133360 atttggtgctgaagtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggc 46133278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 11379196 - 11379139
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||| ||||||| |||||||||| ||||||||||||| | |||||  |||||||    
T  11379196 gtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 27993605 - 27993568
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  27993605 gtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 35206762 - 35206725
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  35206762 gtctggtgggccgatcacttttgatccgagatcgggag 35206725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 8254981 - 8255107
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||     
T  8254981 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcag 8255080  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  8255081 ttctttgactcaagttggtttttgggc 8255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 8268399 - 8268525
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||| | |||||     
T  8268399 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcag 8268498  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  8268499 ttctttgactcaagttggtttttgggc 8268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 438
Target Start/End: Original strand, 30964395 - 30964520
Alignment:
Q  314 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  |||| || |||| |||| ||||||||||||||||||   |||| |||||||||||||||||||||  |||||||||||      
T  30964395 atttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccg 30964494  T
Q  413 ttctttgactcaagttggtttttggg 438  Q
    ||||||||||||||||||||||||||    
T  30964495 ttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 4305679 - 4305801
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    |||| |||||||||||||  ||||||  | || |||| ||||||||||||||||||  |||||||||| |||||||||||||||| ||||||||||| |     
T  4305679 atttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttag 4305778  T
Q  413 ttctttgactcaagttggttttt 435  Q
    ||||||| |||||||||||||||    
T  4305779 ttctttgtctcaagttggttttt 4305801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 25753171 - 25753252
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||| |||| |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||| | ||||||||    
T  25753171 atttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggc 25753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 434
Target Start/End: Complemental strand, 38637301 - 38637238
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttt 434  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||    
T  38637301 gtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 30167628 - 30167566
Alignment:
Q  376 gtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    ||||| |||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||    
T  30167628 gtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 40813850 - 40813797
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactca 424  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||    
T  40813850 gtctggtgggccgatcacttttgattcgagatcgggagccaattttttgactca 40813797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 438
Target Start/End: Complemental strand, 53823503 - 53823423
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||||||  ||| ||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||| | |||||||    
T  53823503 atttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 439
Target Start/End: Original strand, 2825776 - 2825863
Alignment:
Q  352 ctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||| ||||||| |||| ||| ||||||||||||| ||||||||| ||||||||| |||  |||||| |||||  ||||||||||||    
T  2825776 ctgctgatttggttctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggc 2825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 444
Target Start/End: Complemental strand, 31050761 - 31050658
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcc 440  Q
    |||| |||| ||| || ||||||| |||| ||||||||||||||||||||||||||| ||||||| ||| |  ||||||  |  |||||||||||||||     
T  31050761 cgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggct 31050662  T
Q  441 tttg 444  Q
    ||||    
T  31050661 tttg 31050658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 428
Target Start/End: Complemental strand, 22811242 - 22811172
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||  ||| ||||||||||||||||| |||| |||| ||||||||||||| ||||||| ||||||||    
T  22811242 atttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 39421080 - 39421038
Alignment:
Q  373 ctggtgggccgatcacttttgattcaagatcgggagtcaattc 415  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  39421080 ctggtgggccgatcacttttgattcgagatcgggagtcaattc 39421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 38929839 - 38929907
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||| ||||||||||||||||||||| |||||  |||||| ||||||| |||||||| | ||||||||    
T  38929839 gtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggc 38929907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 36962684 - 36962626
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttgg 430  Q
    ||||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||||    
T  36962684 gtctggtgggccgattacttttgattcgagatcaggagtc-agtctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 429
Target Start/End: Complemental strand, 39041343 - 39041285
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttg 429  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||  | |||||||||||    
T  39041343 gtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 6600014 - 6599957
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||||||||||| |||||||||  ||||||||||||  |||||||| |||||||    
T  6600014 gtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagtt 6599957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 21387273 - 21387216
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||| ||||||||||||||||| ||||||| ||||| ||||| || |||||||    
T  21387273 gtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 46698854 - 46698797
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||||||||||  |||||||||| ||||||||||||| |||||||  |||||||    
T  46698854 gtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagtt 46698797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 49747526 - 49747586
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattcttt 418  Q
    ||||||| |||| |||||||| |||||||||||||||||  |||||| |||||| ||||||    
T  49747526 atttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Original strand, 53756768 - 53756802
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgg 405  Q
    ||||||||||||||||||||||||||| |||||||    
T  53756768 gtctggtgggccgatcacttttgattcgagatcgg 53756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 2061812 - 2061759
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||| ||||||||||| ||||||||||||||| |||| | |||||| |||||||    
T  2061812 ctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttg 2061759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Complemental strand, 2792335 - 2792286
Alignment:
Q  379 ggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||||||||||||||| ||||||| ||||| ||  ||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 16501746 - 16501783
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  16501746 tggtgggccgatcgcttttgattcgagatcgggagtca 16501783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 24740172 - 24740132
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||||||||||||||| ||| | ||||||||||||||||||    
T  24740172 gtctggtgggccgatcgcttataattcaagatcgggagtca 24740132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 37707424 - 37707392
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatc 403  Q
    ||||||||||||||||||||||||||| |||||    
T  37707424 gtctggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 346 - 444
Target Start/End: Original strand, 19176489 - 19176587
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||    
T  19176489 ggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttttg 19176587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 20611737 - 20611863
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| ||||||||||| ||||||  || || ||||||||||| ||||||||| |||||||||||||     
T  20611737 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcag 20611836  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||| ||||||||||||||||    
T  20611837 ttctttgacttaagttggtttttgggc 20611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 17550969 - 17551037
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  17550969 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 17551037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 356 - 436
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  356 taatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttg 436  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 9584147 - 9584049
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||||||||||| |||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||| ||||    
T  9584147 ggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttg 9584049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 2392632 - 2392507
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    ||||||||| |||||||  ||||||  |||| |||| ||||||||||||||||||  | ||||||| ||||||||||||||||| |||| || ||||| |    
T  2392632 tttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagt 2392533  T
Q  414 tctttgactcaagttggtttttgggc 439  Q
    |||||| || ||||||||||||||||    
T  2392532 tctttgtcttaagttggtttttgggc 2392507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 34475880 - 34475755
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    |||| ||||||||||||  ||||||  |||| |||| |||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||     
T  34475880 tttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaa 34475781  T
Q  414 tctttgactcaagttggtttttgggc 439  Q
    |||| || | |||||| |||||||||    
T  34475780 tcttggaattaagttgatttttgggc 34475755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 2394379 - 2394255
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    ||||||||| |||||||  ||||||  |||| |||| ||||||||||||||||||  | ||||||| ||||||||||||||||| |||| || ||||| |    
T  2394379 tttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagt 2394280  T
Q  414 tctttgactcaagttggtttttggg 438  Q
    |||||| || |||||||||||||||    
T  2394279 tctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 444
Target Start/End: Complemental strand, 40023666 - 40023568
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcctttg 444  Q
    |||| |||||| |||| ||  ||| ||||||||| ||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||| ||||    
T  40023666 ggtgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggcttttg 40023568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 14755339 - 14755286
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14755339 ctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 444
Target Start/End: Original strand, 45398778 - 45398881
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggcc 440  Q
    |||| |||| |||||| ||||||   ||| ||||||||| ||||||||||||||||| |||||| ||||||  ||||||| | ||||||||||||||||     
T  45398778 cgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggct 45398877  T
Q  441 tttg 444  Q
    ||||    
T  45398878 tttg 45398881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 439
Target Start/End: Original strand, 45163835 - 45163935
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtg--ggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||| |||| ||||||||||||||||||  |||| |||  ||||||||||||||||||| ||||| | ||||| || |||| || |||||||||||||||    
T  45163835 cgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttggg 45163934  T
Q  439 c 439  Q
    |    
T  45163935 c 45163935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 47945713 - 47945786
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||| || |||| |||||||| | ||||||||    
T  47945713 ctaaagtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggc 47945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 436
Target Start/End: Complemental strand, 23328449 - 23328354
Alignment:
Q  341 cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttg 436  Q
    |||| |||| |||| | ||||||| |||| || |||||| ||||||||||||||||| ||||||||||| |  | |||| ||||||||||||||||    
T  23328449 cgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggctcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 14879442 - 14879486
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtc 410  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  14879442 ctaaagtctggtgggccgatcacttttgattcgagatcgggagtc 14879486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 14193939 - 14194009
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||| |||||| || ||||||||||||||||| |||| |||||||  ||||||| ||||||||    
T  14193939 atttggtcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 30127274 - 30127332
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattct-ttgactcaagtt 428  Q
    |||||||| ||||||| |||||||||| ||||||||||||| |||| ||||||||||||    
T  30127274 gtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 5556582 - 5556639
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||||| ||||| |||||||||| ||||||||||||| |||||||  |||||||    
T  5556582 gtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 20710777 - 20710740
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggag 408  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  20710777 gtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 33144018 - 33143949
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaag-ttggtttttgggc 439  Q
    |||||||||  |||||||||||||||| ||||||||||||| |||||||  ||||| || ||||||||||    
T  33144018 gtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggc 33143949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 419
Target Start/End: Original strand, 37123397 - 37123442
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagttctttg 37123442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 39021342 - 39021297
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||||||||||||||| || |||||||||| |||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttg 39021297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 439
Target Start/End: Complemental strand, 1652979 - 1652887
Alignment:
Q  347 gtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||| || ||||||| || |  ||| |||||||||||||||||||||| ||||| ||||| | |||||||  ||||||| | ||||||||    
T  1652979 gtgtccttctgatttggtcctgaactcttgtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggc 1652887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 31482880 - 31482964
Alignment:
Q  355 ctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||||| |||  |||||| |||| ||||||||||||||| ||||||||| |||| ||||  | | |||||| |||||||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaaaattaagttgatttttgggc 31482964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 2782138 - 2782081
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||||| |||||||||||||||  |||||||||| || || ||||||| |||||    
T  2782138 gtctggtgggacgatcacttttgattttagatcgggagccagttttttgactaaagtt 2782081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 47235729 - 47235778
Alignment:
Q  390 tttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||||| |||||| |||||  |||||||||| ||||||||||||||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggc 47235778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 24099396 - 24099360
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcggga 407  Q
    ||||||||||||||||||||||||||| | |||||||    
T  24099396 gtctggtgggccgatcacttttgattcgatatcggga 24099360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 31424248 - 31424304
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagt 427  Q
    ||||||| ||||| || |||||||||| ||||||||||||| | |||||| ||||||    
T  31424248 gtctggtaggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 351 - 439
Target Start/End: Original strand, 34378090 - 34378178
Alignment:
Q  351 cctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  34378090 cctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggc 34378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 698315 - 698441
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||  ||||||  |||| |||| |||||||||||||| |||  ||||||||| |||||| |||||||||| ||||||||||||||    
T  698315 atttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaa 698414  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
     ||||||||||||||||||||||||||    
T  698415 ctctttgactcaagttggtttttgggc 698441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 18593197 - 18593323
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||| ||  ||||||  |||| | || |||||||||||||| |||  || | |||||| ||||||||||||||| ||||||||||| |     
T  18593197 atttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttag 18593296  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  18593297 ttctttgactcaagttggtttttgggc 18593323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 13954316 - 13954235
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| | ||||| |||||||| | ||||||||    
T  13954316 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggc 13954235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 7195308 - 7195251
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  7195308 gtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 7392113 - 7392052
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||| |||||||    
T  7392113 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 22675398 - 22675325
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| ||||||||| ||||||  ||||||||| ||||||||||||| ||||||| |||||||| | ||||||||    
T  22675398 ctaaagtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggc 22675325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 33258976 - 33258903
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||| ||  |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| | |||||||    
T  33258976 ggtgtccttctgttttggtgctaaagtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 39184256 - 39184208
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 21402903 - 21402853
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactca 424  Q
    |||||||||||||||||||  ||| ||||||||||||| ||||||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 27713081 - 27713149
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||| |||||||||||  ||||||||| ||||||||| ||| ||||||| |||||||| | ||||||||    
T  27713081 gtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggc 27713149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 25992007 - 25992066
Alignment:
Q  359 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattcttt 418  Q
    |||||| |||| |||||||||||| ||| |||||||||| |||||| |||||| ||||||    
T  25992007 tttggtgctaaagtctggtgggccaatcgcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 7162353 - 7162319
Alignment:
Q  404 gggagtcaattctttgactcaagttggtttttggg 438  Q
    |||||||| ||||||||||||||||||||||||||    
T  7162353 gggagtcagttctttgactcaagttggtttttggg 7162319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 26046045 - 26045995
Alignment:
Q  359 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagt 409  Q
    |||||| |||| ||||||||  ||||||||||||||||| |||||||||||    
T  26046045 tttggtcctaaagtctggtgaaccgatcacttttgattcgagatcgggagt 26045995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 12046270 - 12046303
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcggga 407  Q
    |||||||||||||||||||||||| |||||||||    
T  12046270 tggtgggccgatcacttttgattcgagatcggga 12046303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 8297498 - 8297546
Alignment:
Q  389 ttttgattcaagatcgggagtcaattctttgactcaagttggtttttgg 437  Q
    ||||||||| ||||||||||||| ||||||| |||||||| | ||||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 8297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 14302511 - 14302451
Alignment:
Q  359 tttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||| |||| ||||||||| | ||||||||||| ||| |||| |||||||| |||||||    
T  14302511 tttggtcctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttg 14302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 23426356 - 23426424
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||| |||| |||||||||||| |||| |||||||| ||||| || |||| || | ||||||||    
T  23426356 gtctggtggaccgaacacttttgattcgagattgggagtcagttcttcgaatcaattttggttttgggc 23426424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 3117447 - 3117573
Alignment:
Q  314 atttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaa 412  Q
    ||||||||||||||||||   |||||  |||| |||| |||||||||||| |  ||  || ||||||||||||||||||||||||||||||||||||||     
T  3117447 atttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcag 3117546  T
Q  413 ttctttgactcaagttggtttttgggc 439  Q
    |||||||||||||||||||||||||||    
T  3117547 ttctttgactcaagttggtttttgggc 3117573  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 437
Target Start/End: Complemental strand, 16510425 - 16510304
Alignment:
Q  317 tggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattc 415  Q
    |||||||||||||||  |||| || | || |||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||| | |||||| |||    
T  16510425 tggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttc 16510326  T
Q  416 tttgactcaagttggtttttgg 437  Q
    ||| ||||||||||||||||||    
T  16510325 ttttactcaagttggtttttgg 16510304  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 32935421 - 32935342
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgg 437  Q
    ||||||| || | |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||| | ||||||    
T  32935421 atttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttgg 32935342  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 26216088 - 26216042
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctt 417  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  26216088 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 26534815 - 26534742
Alignment:
Q  344 gaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctt 417  Q
    |||||| ||| || ||||||| || | ||||||||||||||||||||||||||| |||| |||||||| |||||    
T  26534815 gaggtggccttctgatttggtcctgaagtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 9224042 - 9224101
Alignment:
Q  360 ttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    ||||| |||| ||||||||||| |||| |||||||||| ||||||||||||| |||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 425
Target Start/End: Original strand, 34105428 - 34105479
Alignment:
Q  374 tggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 425  Q
    |||||||||||||||||||||||| ||||||||||||| ||  |||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 439
Target Start/End: Complemental strand, 20701870 - 20701804
Alignment:
Q  373 ctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    |||||| |||||||||||||||||| ||||||||||| | ||||||| || ||||| | ||||||||    
T  20701870 ctggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttttgggc 20701804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 34092807 - 34092864
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||| |||||||||||||||||| |||| || |||| ||||||||| |||||||    
T  34092807 gtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtt 34092864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 397
Target Start/End: Complemental strand, 3880710 - 3880626
Alignment:
Q  314 atttggtttttctctggtacaccg-ggccgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattc 397  Q
    ||||||| ||||||||||  |||| ||  |||||||| ||| || ||||||| |||| || ||||||||||||||||||||||||    
T  3880710 atttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattc 3880626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 21266112 - 21266163
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagt 409  Q
    ||||||| |||| | |||||||||||||| |||||||||| |||||||||||    
T  21266112 atttggtcctaaagactggtgggccgatcgcttttgattcgagatcgggagt 21266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 13423482 - 13423535
Alignment:
Q  375 ggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||| ||||||||||||||||| |||||| |||||  ||||||| ||||||||    
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggctcaagtt 13423535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 417
Target Start/End: Original strand, 12794101 - 12794173
Alignment:
Q  346 ggtgtcctgctaatttggtactaacgtctggtgggccgatca-cttttgattcaagatcgggagtcaattctt 417  Q
    |||||||| ||  |||||| |||| |||| |||||||||||| |||||||||| ||||| ||||||| |||||    
T  12794101 ggtgtccttctgttttggttctaaagtctagtgggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 34090375 - 34090415
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtca 411  Q
    |||||||||| |||||| ||||||||| |||||||||||||    
T  34090375 gtctggtgggtcgatcaattttgattcgagatcgggagtca 34090415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 35897 - 35773
Alignment:
Q  315 tttggtttttctctggtacaccgggc-cgagaggtgtcctgctaatttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaat 413  Q
    |||||||||||||||||  ||||||  |||| |||| |  |||||||||||  ||  |||| |||||||||||||||||||||| |||||||||||| ||    
T  35897 tttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtc-at 35799  T
Q  414 tctttgactcaagttggtttttgggc 439  Q
    ||||||||| ||||||||||||||||    
T  35798 tctttgacttaagttggtttttgggc 35773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 439
Target Start/End: Original strand, 19382 - 19463
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | ||||||||    
T  19382 atttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggc 19463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 42212 - 42140
Alignment:
Q  366 ctaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagttggtttttggg 438  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | |||||||    
T  42212 ctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 58126 - 58196
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    ||||||| |||| || |||||||||||||||||||||||||||||||| |||||||| ||||  |||||||    
T  58126 atttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtt 58196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 36706 - 36773
Alignment:
Q  358 atttggtactaacgtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 425  Q
    ||||||| |||| |||||| |||| ||||||||||||||| ||||||||||||| ||||||| |||||    
T  36706 atttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 1086 - 1038
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttg 419  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  1086 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 3842 - 3896
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaa 425  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||  |||||||||    
T  3842 gtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 8141 - 8198
Alignment:
Q  371 gtctggtgggccgatcacttttgattcaagatcgggagtcaattctttgactcaagtt 428  Q
    |||||||| |||||||||||||||||| |||| || |||| ||||||||| |||||||    
T  8141 gtctggtgagccgatcacttttgattcgagataggaagtctattctttgattcaagtt 8198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 5747 - 5785
Alignment:
Q  401 atcgggagtcaattctttgactcaagttggtttttgggc 439  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  5747 atcgggagtcagttctttgactcaggttggtttttgggc 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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