View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_high_5 (Length: 367)
Name: NF12839_high_5
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 52605519 - 52605178
Alignment:
| Q |
18 |
gagaggacctttttgttaactaggttgcaaattctaaggaacggaatgttgcacttttcactccttaatttactcatcatttatgttcaaaattccattt |
117 |
Q |
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| T |
52605519 |
gagaggacctttttgttaactaggttgcaaattctaaggaacggaatgttgcacttttcactccttaatttactcatcatttatgttcaaaattccattt |
52605420 |
T |
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| Q |
118 |
ggttaaaataatagtattactattactattgctattattttgtcaccatagaattgaagtgaattaatgaggtttggtgaaatttctgaccaaagagatg |
217 |
Q |
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| T |
52605419 |
ggttaaaataatagtattactattactattgctattattttgtcaccatagaattgaagtgaattaatgaggtttggtgaaatttctgaccaaagagatg |
52605320 |
T |
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| Q |
218 |
tgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatagttaatgtcccattcttataacactctctctttccctcactaacaatataa |
317 |
Q |
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| T |
52605319 |
tgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatagttaatgtcccattcttataacactctctctttccctcactaacaatataa |
52605220 |
T |
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| Q |
318 |
atcaattccttttgcttcctctacctccttctttttcatctc |
359 |
Q |
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| T |
52605219 |
atcaattccttttgcttcctctacctccttcttgttcatctc |
52605178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 16906283 - 16906179
Alignment:
| Q |
168 |
gaattgaagtgaattaatgaggtttggtgaaatttctgaccaaagagatgtgatgtatcaaattcaaagtcttttactgcatatatccgaggtaccatag |
267 |
Q |
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| T |
16906283 |
gaattgaagtcaattaatgaggtttggtacaatttctgaccaaa---ttgtgatgtatcaaggtc----tctttaactgc--atatccgaggtaccatag |
16906193 |
T |
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| Q |
268 |
ttaatgtcccattc |
281 |
Q |
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||||||||| |||| |
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| T |
16906192 |
ttaatgtcctattc |
16906179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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