View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_1 (Length: 696)
Name: NF12839_low_1
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 687
Target Start/End: Original strand, 24992702 - 24993352
Alignment:
| Q |
18 |
gttacagtactcaaaattattcttaaataaattattaagaaaaggatatgaatatgtatggcctctgggatatagttgctaacagttgctaaagtggttc |
117 |
Q |
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| T |
24992702 |
gttacagtagtcaaaattattcttaaataaattattaagaaaaggatatgaatatgtatggcctctgggatatagttgctaat----------gtggttc |
24992791 |
T |
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| Q |
118 |
gatttgacgannnnnnnacgcaattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaatt |
217 |
Q |
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| T |
24992792 |
gatttgacgatttttttactcaattttattgtgttcgttgattgtggtgtcttctctccctatttgtggttacagataatcagaagctctatattcaatt |
24992891 |
T |
|
| Q |
218 |
aatcagaagctcaagcggagatcatagcccgaaaactttgaatgacttagagaaaagacagttgaattgaagaggtcacctctgatctgattttcagttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24992892 |
aatcagaagctcaagcggagatcatagcccgaaaactttgaatgacttagagaaaagacagttga-----agaggtcacctctgatctgattttcagttt |
24992986 |
T |
|
| Q |
318 |
ctctatattcaattaatttcgaacttttaaaattatcatgtcattagtgttcagattattattcaaaccttatttcttattaatttttggcttgtgatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
24992987 |
ctctatattcaattaatttcgaacttttaaaattatcatgccattagtgttcagattattatgcaaaccttatttcttattaattttttgcttgtgatat |
24993086 |
T |
|
| Q |
418 |
ctattgtagggtgtggctggtgatagaatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgtgtgtatatttatctatatagct |
517 |
Q |
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| T |
24993087 |
ctattgtagggtgtggctggtgatagtatcaacggtgtaaatcagcactcgtaaaggtttgtgtgtagatgaa----tgtgtatatttagatatatagct |
24993182 |
T |
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| Q |
518 |
tttgaatacaaaactaaagctgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttattattgttaaataatgtgtt |
617 |
Q |
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| T |
24993183 |
tttgaatacaaaactaaagctgcaaatttacaacaagtatggcatctgcaaaatgctagcatgtgcagtaaactgatttaatattgttaaataatgtgtt |
24993282 |
T |
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| Q |
618 |
ggagcggctcaaatatgaacaagatgatatcgatgaaaattcggtcacaggtttttggctctctctgtgc |
687 |
Q |
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| T |
24993283 |
ggagcggctaaaatatgaacgagatgatatcgatgaaaattcggtcactggtttttggctctctctgtgc |
24993352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 495
Target Start/End: Original strand, 1618104 - 1618173
Alignment:
| Q |
427 |
ggtgtggctggtgatag-aatcaacggtgtaaatcagcactcttaaaggtttgtgtgtagatgaatgtgt |
495 |
Q |
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| T |
1618104 |
ggtgtggcttgtgataataattaagggtgtaaaccagcactcttaaaggtttgtgcttagatgaatgtgt |
1618173 |
T |
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