View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_10 (Length: 356)
Name: NF12839_low_10
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 1647258 - 1647415
Alignment:
| Q |
17 |
gctagaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgaggttgacaagccacttggtctcactttaggccaaaaga |
116 |
Q |
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| T |
1647258 |
gctagaaagagacttgagatcactgcaagaactgctggtgcttcaaagacaattgaagctgaggttgacaagccacttggtctcactttaggccaaaaga |
1647357 |
T |
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| Q |
117 |
atggtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
174 |
Q |
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| T |
1647358 |
atggtggcggtgttgttataacggtcagtatctcgctcaatttcccattaattcaatg |
1647415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 1647417 - 1647553
Alignment:
| Q |
220 |
ttgaaggcatgtctggtatccgacataagcgacacgacaccgacacatatggttaaattccaatatttcacgttctcaaaatattatt----------tg |
309 |
Q |
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| T |
1647417 |
ttgaaggcatgtctggtatccgacataagcgacacgacactgacacatatggttaaattccaatatttcacgttctcaaaatattatttgcgtcgatgtg |
1647516 |
T |
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| Q |
310 |
tcagtgttgtttcctatgtctgatatccttgtctgtg |
346 |
Q |
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| T |
1647517 |
tcagtgttgtgtcctatgtctaatatccttgtctgtg |
1647553 |
T |
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