View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12839_low_11 (Length: 316)

Name: NF12839_low_11
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12839_low_11
NF12839_low_11
[»] chr4 (22 HSPs)
chr4 (12-301)||(1148241-1148541)
chr4 (216-301)||(1164623-1164708)
chr4 (219-302)||(1181262-1181345)
chr4 (18-110)||(1171866-1171955)
chr4 (219-302)||(1172014-1172097)
chr4 (50-91)||(1164409-1164450)
chr4 (144-192)||(18513176-18513224)
chr4 (153-197)||(19312411-19312455)
chr4 (143-197)||(3947701-3947755)
chr4 (144-190)||(37203324-37203370)
chr4 (144-197)||(14465006-14465059)
chr4 (144-197)||(22234820-22234873)
chr4 (144-197)||(23292927-23292980)
chr4 (144-197)||(24613631-24613684)
chr4 (219-293)||(1137038-1137112)
chr4 (68-110)||(1181158-1181200)
chr4 (148-194)||(3712458-3712504)
chr4 (144-198)||(42640588-42640642)
chr4 (224-293)||(1141697-1141766)
chr4 (145-194)||(22440559-22440608)
chr4 (144-193)||(24343582-24343631)
chr4 (143-192)||(40965341-40965390)
[»] chr5 (3 HSPs)
chr5 (144-197)||(32766873-32766926)
chr5 (144-196)||(42893426-42893478)
chr5 (144-197)||(43564946-43564999)
[»] scaffold0003 (1 HSPs)
scaffold0003 (144-197)||(241670-241723)
[»] chr7 (10 HSPs)
chr7 (144-197)||(598273-598326)
chr7 (144-197)||(1433524-1433577)
chr7 (144-197)||(21880217-21880270)
chr7 (144-197)||(5409772-5409825)
chr7 (144-197)||(29763130-29763183)
chr7 (144-197)||(15680874-15680927)
chr7 (144-197)||(21864873-21864926)
chr7 (144-197)||(43027405-43027458)
chr7 (144-196)||(9778571-9778623)
chr7 (153-193)||(18215147-18215187)
[»] chr1 (11 HSPs)
chr1 (144-197)||(9828120-9828173)
chr1 (144-193)||(2218297-2218346)
chr1 (144-197)||(6427540-6427593)
chr1 (145-192)||(16297223-16297270)
chr1 (143-197)||(40258873-40258927)
chr1 (148-197)||(5898211-5898260)
chr1 (144-197)||(18556386-18556439)
chr1 (144-197)||(40917825-40917878)
chr1 (145-197)||(1486646-1486698)
chr1 (144-192)||(10233326-10233374)
chr1 (145-197)||(17778618-17778670)
[»] chr8 (9 HSPs)
chr8 (144-197)||(22652052-22652105)
chr8 (163-196)||(12570458-12570491)
chr8 (163-196)||(12570684-12570717)
chr8 (144-189)||(15816059-15816104)
chr8 (144-193)||(24413500-24413549)
chr8 (144-197)||(29447520-29447573)
chr8 (144-193)||(36450695-36450744)
chr8 (144-192)||(27213595-27213643)
chr8 (145-193)||(44067596-44067644)
[»] chr6 (8 HSPs)
chr6 (144-189)||(7378052-7378097)
chr6 (146-193)||(9025448-9025495)
chr6 (154-205)||(33340895-33340946)
chr6 (153-195)||(18803501-18803543)
chr6 (160-198)||(34172252-34172290)
chr6 (144-197)||(17435275-17435328)
chr6 (144-197)||(24645546-24645599)
chr6 (144-192)||(7248439-7248487)
[»] chr3 (10 HSPs)
chr3 (144-197)||(41961580-41961633)
chr3 (144-193)||(11610578-11610627)
chr3 (143-188)||(25211604-25211649)
chr3 (144-197)||(27505316-27505369)
chr3 (145-190)||(29508522-29508567)
chr3 (144-197)||(34185053-34185106)
chr3 (144-197)||(55401140-55401193)
chr3 (153-197)||(4987230-4987274)
chr3 (145-193)||(24204983-24205031)
chr3 (145-193)||(25775576-25775624)
[»] chr2 (6 HSPs)
chr2 (144-197)||(21782745-21782798)
chr2 (144-197)||(26769587-26769640)
chr2 (144-193)||(37419823-37419872)
chr2 (139-196)||(42511318-42511375)
chr2 (145-197)||(2438661-2438713)
chr2 (144-196)||(38117100-38117152)
[»] scaffold0053 (1 HSPs)
scaffold0053 (144-197)||(8863-8916)
[»] scaffold0020 (1 HSPs)
scaffold0020 (144-193)||(135264-135313)
[»] scaffold0652 (1 HSPs)
scaffold0652 (141-193)||(400-452)
[»] scaffold0044 (1 HSPs)
scaffold0044 (153-197)||(53256-53300)
[»] scaffold0019 (1 HSPs)
scaffold0019 (144-196)||(71802-71854)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 1148241 - 1148541
Alignment:
Q  12 acagacgacacaaactaatcaacaagaaaacatgatactaattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaatgtaga 111  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1148241 acagacgacacaaactaatcaacaagaaaacatgagactaattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaatgtaga 1148340  T
Q  112 ccacggtggaagtgaaacaatgtgtctaaagttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac-----------gtgtccat 200  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |||||| ||||||||  ||||           ||||||||    
T  1148341 ccacagtggaagtgaaacaatgtgtctaaagctatgaagctcagacacttctcggattatacgtgttctggtgtcaaacacgtgtcgtgtttgtgtccat 1148440  T
Q  201 atctgtgcttcataggtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgag 300  Q
    ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||    
T  1148441 atccgtgtttcctaggtctaaagccaaaagctcatacataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgag 1148540  T
Q  301 t 301  Q
    |    
T  1148541 t 1148541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 1164623 - 1164708
Alignment:
Q  216 gtctaaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgagt 301  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | ||| |||||| |||||||||||||||    
T  1164623 gtctaaagccaaaagctcatacataaaatcaatgttgatacacaaatatgaggccctcccgataatgttgatgcagaattatgagt 1164708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 1181262 - 1181345
Alignment:
Q  219 taaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgagtg 302  Q
    |||||||||||||||| ||| |||||||| ||||| |||||||||||||||  ||| ||| |||||||||||||||| ||||||    
T  1181262 taaagccaaaagctcaaacacaaaatcaaagttgagacacaaaaatgaggccatgcagataatgttgttgcagaattctgagtg 1181345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 1171866 - 1171955
Alignment:
Q  18 gacacaaactaatcaacaagaaaacatgatactaattgtggccaaaatatatagtatttagtagcaataaagacaaagtgaggattaatgtag 110  Q
    ||||||||| ||||||||||| ||||||||| |||||| || |||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  1171866 gacacaaacaaatcaacaagagaacatgatattaattgcggtcaaaatata---tatttagtagcaataaagactaagagtggattaatgtag 1171955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 1172014 - 1172097
Alignment:
Q  219 taaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaattatgagtg 302  Q
    ||||||||||| |||| ||| ||||||||||| || |||| ||||||||||  ||| ||| |||||||||||||||| ||||||    
T  1172014 taaagccaaaaactcaaacacaaaatcaatgtggagacactaaaatgaggccatgcagataatgttgttgcagaattctgagtg 1172097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 1164409 - 1164450
Alignment:
Q  50 taattgtggccaaaatatatagtatttagtagcaataaagac 91  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  1164409 taattgtggccaaaatacatagtatttagtagcaataaagac 1164450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 18513176 - 18513224
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  18513176 tatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 19312455 - 19312411
Alignment:
Q  153 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  19312455 cggacacttctcagattagacgtgtctcggtgtcggacacgtgtc 19312411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 3947701 - 3947755
Alignment:
Q  143 ttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    ||||||||| |||||||| ||| ||||||  ||||||||||||||||||||||||    
T  3947701 ttatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtc 3947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 37203370 - 37203324
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggac 190  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||||    
T  37203370 tatgaagcacggacacttctcggattagacgtgtcccggtgtcggac 37203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 14465006 - 14465059
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||||||||||||||||||  |||||| |||||||||    
T  14465006 tatgaagcacggacactcctcagattagacgtgtcccagtgtcgaacacgtgtc 14465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 22234820 - 22234873
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| || ||||||||| ||||||  ||||||||||||||||||||||||    
T  22234820 tatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtc 22234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 23292927 - 23292980
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  23292927 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 23292980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 24613631 - 24613684
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||  ||||||||||||||||||||| ||||||||||    
T  24613631 tatgaagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtc 24613684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 1137038 - 1137112
Alignment:
Q  219 taaagccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaa 293  Q
    |||||||||||||||| ||||||||  |||||||| ||||||| || |||| |||| ||| ||| || |||||||    
T  1137038 taaagccaaaagctcaaacataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcagaa 1137112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 1181158 - 1181200
Alignment:
Q  68 atagtatttagtagcaataaagacaaagtgaggattaatgtag 110  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  1181158 atagtatttagtagcaataaagactaagagtggattaatgtag 1181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 3712458 - 3712504
Alignment:
Q  148 aagctcggacacttctcagattagacgtgtcctggtgtcggacacgt 194  Q
    |||| |||||||| |||||||||| ||||||| ||||||||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacacgt 3712504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 42640642 - 42640588
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtcc 198  Q
    |||||||| |||| ||| ||| |||||| |||||||||||| |||||||||||||    
T  42640642 tatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtcc 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 1141697 - 1141766
Alignment:
Q  224 ccaaaagctcatacataaaatcaatgttgaaacacaaaaatgaggcactgctgatgatgttgttgcagaa 293  Q
    ||||||||||| ||||||||| |||||||| ||||||| || |||| |||| ||| ||| || |||||||    
T  1141697 ccaaaagctcaaacataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaa 1141766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 22440559 - 22440608
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgt 194  Q
    ||||||| |||||||| ||| |||||| |||||||| |||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacacgt 22440608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 24343631 - 24343582
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||| |||||| ||| ||||||| |||||||||||||    
T  24343631 tatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacg 24343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 40965390 - 40965341
Alignment:
Q  143 ttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    ||||||||| | |||||| |||||||||| |||||| |||||||||||||    
T  40965390 ttatgaagcaccgacactcctcagattaggcgtgtcttggtgtcggacac 40965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 32766873 - 32766926
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  32766873 tatgaagcacggacactcctcagattagacgtatcctggtgtcggacacgtgtc 32766926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 42893478 - 42893426
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    ||||||||  ||||||| |||| ||||| ||||||||||||||||||||||||    
T  42893478 tatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgt 42893426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 43564999 - 43564946
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| ||||||| || ||||||||| ||||    
T  43564999 tatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtc 43564946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 241723 - 241670
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| ||||||| |||||||||||||||||    
T  241723 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 241670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 598326 - 598273
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| ||||||| |||||||||||||||||    
T  598326 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc 598273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 1433577 - 1433524
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||||| ||||    
T  1433577 tatgaagcacggacactcctcggattagacgtgtcctggtgtcggacacatgtc 1433524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 21880270 - 21880217
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||    
T  21880270 tatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtc 21880217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 5409772 - 5409825
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  5409772 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 5409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 29763130 - 29763183
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| ||||||||| |||||||||||||||    
T  29763130 tatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtgtc 29763183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 15680927 - 15680874
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| |||  ||||||||||||  |||||||||||||||||    
T  15680927 tatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc 15680874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 21864926 - 21864873
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| | |||||| |||  ||||||||||||| |||||||||||||||||    
T  21864926 tatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtc 21864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 43027405 - 43027458
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| ||||||||  || |||||| ||||||| |||||||||||||||||    
T  43027405 tatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtc 43027458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 9778623 - 9778571
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    |||||||| |||||||| ||  |||||| ||||||| ||||||||||||||||    
T  9778623 tatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgt 9778571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 18215147 - 18215187
Alignment:
Q  153 cggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||||| ||||||| |||||||||||||    
T  18215147 cggacactcctcagattaggcgtgtcccggtgtcggacacg 18215187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 9828173 - 9828120
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||||||||||| |||||||||||||||||    
T  9828173 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtc 9828120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 2218346 - 2218297
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||| |||||||||| |||||||| ||||||||||||    
T  2218346 tatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacacg 2218297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 6427593 - 6427540
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| ||||||||  ||||||||| ||||||| |||||||||||||||||    
T  6427593 tatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtc 6427540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 16297223 - 16297270
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    ||||||| |||||||| ||| |||||| ||||||||||||||||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacac 16297270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 40258873 - 40258927
Alignment:
Q  143 ttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||||  ||||||| ||| |||||| ||||||||||||||||||| |||||    
T  40258873 ttatgaagcatggacactcctcggattaggcgtgtcctggtgtcggacaggtgtc 40258927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 5898211 - 5898260
Alignment:
Q  148 aagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||| |||||||| ||| |||||||||||||| ||||| |||||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtc 5898260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 18556386 - 18556439
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| |||||||  |||||||| |||||||    
T  18556386 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggatacgtgtc 18556439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 40917878 - 40917825
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||| | ||| |||||| ||||||| |||||||||||||||||    
T  40917878 tatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtc 40917825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 1486646 - 1486698
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    ||||||| | |||||| ||| |||||| ||||||| |||||||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 1486698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 10233374 - 10233326
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    |||||||| |||||||| ||| ||||||  |||||||||||||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacac 10233326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 17778670 - 17778618
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    ||||||| || ||||||||| |||||| | ||||| |||||||||||||||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacacgtgtc 17778618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 22652105 - 22652052
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||||||||||| |||||||||||| ||||    
T  22652105 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtc 22652052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 12570458 - 12570491
Alignment:
Q  163 tcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    ||||||||| ||||||||||||||||||||||||    
T  12570458 tcagattaggcgtgtcctggtgtcggacacgtgt 12570491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 12570684 - 12570717
Alignment:
Q  163 tcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    ||||||||| ||||||||||||||||||||||||    
T  12570684 tcagattaggcgtgtcctggtgtcggacacgtgt 12570717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 15816059 - 15816104
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcgga 189  Q
    |||||||| |||||||||||| |||||| ||||||| |||||||||    
T  15816059 tatgaagcacggacacttctcggattaggcgtgtcccggtgtcgga 15816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 24413500 - 24413549
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||||||| |||||||||||||| | ||| |||||||    
T  24413500 tatgaagcacggacacttctcggattagacgtgtcccgctgttggacacg 24413549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 29447573 - 29447520
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||||| ||||| |||||||||||| ||||    
T  29447573 tatgaagcacggacactcctccgattagacctgtcccggtgtcggacacatgtc 29447520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 36450695 - 36450744
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| | |||||| ||| |||||| |||||||||||||||||||||    
T  36450695 tatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacg 36450744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 27213643 - 27213595
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    |||||||| |||||||||||| |||||| ||||||| |||||| |||||    
T  27213643 tatgaagcacggacacttctcggattagccgtgtcccggtgtccgacac 27213595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 44067644 - 44067596
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    ||||||| |||||||| |||  ||||| |||||||||||||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 44067596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 7378097 - 7378052
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcgga 189  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||||    
T  7378097 tatgaagcacggacacttctcagattagccgtgtcccggtgtcgga 7378052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 9025448 - 9025495
Alignment:
Q  146 tgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||| |||||||||||| |||||| ||||||| |||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 33340895 - 33340946
Alignment:
Q  154 ggacacttctcagattagacgtgtcctggtgtcggacacgtgtccatatctg 205  Q
    ||||||||||||||||||||||||||  |||||||||||  ||| |||||||    
T  33340895 ggacacttctcagattagacgtgtcccagtgtcggacacacgtcgatatctg 33340946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 18803501 - 18803543
Alignment:
Q  153 cggacacttctcagattagacgtgtcctggtgtcggacacgtg 195  Q
    |||||||||||| |||||||||||||||| ||||||| |||||    
T  18803501 cggacacttctcggattagacgtgtcctgatgtcggatacgtg 18803543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 34172290 - 34172252
Alignment:
Q  160 ttctcagattagacgtgtcctggtgtcggacacgtgtcc 198  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  34172290 ttctcggattaggcgtgtcctggtgtcggacacgtgtcc 34172252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 17435328 - 17435275
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||  ||||||||| |||||||||||||||||  |||||| |||||||||    
T  17435328 tatgaagtacggacacttttcagattagacgtgtcccagtgtcgaacacgtgtc 17435275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 24645599 - 24645546
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| | ||||||  || ||||||||||||| ||||||||||||||||||    
T  24645599 tatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtc 24645546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 7248487 - 7248439
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacac 192  Q
    |||||||| |||||||| ||| |||| ||||||||| ||||||||||||    
T  7248487 tatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 41961580 - 41961633
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||||||| |||||| |||||||  ||||||||||||||||    
T  41961580 tatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtc 41961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 11610627 - 11610578
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||| |||||||||| ||||||| | |||||||||||    
T  11610627 tatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 25211649 - 25211604
Alignment:
Q  143 ttatgaagctcggacacttctcagattagacgtgtcctggtgtcgg 188  Q
    ||||||||| |  |||||||||||||||| ||||||||||||||||    
T  25211649 ttatgaagcacaaacacttctcagattaggcgtgtcctggtgtcgg 25211604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 27505369 - 27505316
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| | ||||| |||||||||||||||||    
T  27505369 tatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtc 27505316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 29508567 - 29508522
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggac 190  Q
    ||||||| |||||||||||  |||||||||||||| ||||||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtcggac 29508522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 34185053 - 34185106
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| ||||||| |||||||||||| ||||    
T  34185053 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtc 34185106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 55401193 - 55401140
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| ||||||  |||||||||||||||||    
T  55401193 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc 55401140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 4987230 - 4987274
Alignment:
Q  153 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| ||| |||||| ||||||| |||||||||||||||||    
T  4987230 cggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc 4987274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 24204983 - 24205031
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    ||||||| |||||||| |||  ||||| |||||||||||||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 24205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 25775624 - 25775576
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    ||||||| || ||||| ||| |||||| |||||||||||||||||||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacg 25775576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 21782745 - 21782798
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| | |||||||||||||||| ||||| |||||||||||    
T  21782745 tatgaagcacggacactccacagattagacgtgtcccggtgttggacacgtgtc 21782798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 26769640 - 26769587
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||||||| ||| |||||| |||||||  ||||||||||||||||    
T  26769640 tatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtc 26769587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 37419872 - 37419823
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| |||||||| ||| |||||| ||||||| |||||||||||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 42511318 - 42511375
Alignment:
Q  139 aaagttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    |||| |||||||| |||||||| ||| |||||| |||||||  |||||||||||||||    
T  42511318 aaagctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgt 42511375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 2438661 - 2438713
Alignment:
Q  145 atgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    ||||||| |||||||| ||| |||||| ||||||| ||||||||||| |||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc 2438713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 38117100 - 38117152
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    |||||||| |||||||  ||| |||||| ||||||| ||||||||||||||||    
T  38117100 tatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgt 38117152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 8916 - 8863
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||| |||| ||| |||||||||| ||||||  |||||||||||||||||    
T  8916 tatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtc 8863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 135264 - 135313
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    |||||||| || ||||  |||||||||| |||||||||||||||||||||    
T  135264 tatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacg 135313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 400 - 452
Alignment:
Q  141 agttatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacg 193  Q
    ||||||||||| |||||||| ||| ||||||  |||||| |||||||||||||    
T  400 agttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 53300 - 53256
Alignment:
Q  153 cggacacttctcagattagacgtgtcctggtgtcggacacgtgtc 197  Q
    |||||||||||  ||||| |||||||| |||||||||||||||||    
T  53300 cggacacttcttggattaaacgtgtcccggtgtcggacacgtgtc 53256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 71854 - 71802
Alignment:
Q  144 tatgaagctcggacacttctcagattagacgtgtcctggtgtcggacacgtgt 196  Q
    |||||||| | |||||| ||| |||||| ||||||| ||||||||||||||||    
T  71854 tatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgt 71802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University