View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_14 (Length: 302)
Name: NF12839_low_14
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 3544894 - 3544605
Alignment:
| Q |
1 |
tgctggtaacttgagcaacattgacaaccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544894 |
tgctggtaacttgagcaacattgacaaccctgtccttgatggcagccttaacaattccattcatggaaggaccagcaaagccatcaagacaagtgttatc |
3544795 |
T |
|
| Q |
101 |
atcagtaagtgcagcactgacccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544794 |
atcagtaagtgcagcactgacccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgaccaatactgcctaactccctaaccgat |
3544695 |
T |
|
| Q |
201 |
tggctaagactgtccaaactgtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544694 |
tggctaagactgtccaaactgtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatgcctcttgcttttgat |
3544605 |
T |
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