View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12839_low_15 (Length: 302)
Name: NF12839_low_15
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 6922063 - 6921798
Alignment:
| Q |
18 |
ctggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6922063 |
ctggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtct |
6921964 |
T |
|
| Q |
118 |
gcatgcaagattgttatttcgcggagtatcacgaacactcgttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6921963 |
gcatgcaagattgttatttcgcggagtatcacgaacactcgttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaa |
6921864 |
T |
|
| Q |
218 |
ctatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6921863 |
ctatcccaagcccaggaaaaatgtttgcaacttcacatttggttatgatatttcaatagacactta |
6921798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 6948593 - 6948325
Alignment:
| Q |
18 |
ctggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtct |
117 |
Q |
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|
||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6948593 |
ctggagagtaactcacattctctcacccttaccgatccttaccaccaattcccttacaaggacgctggtagggttgttggttcatgcaatggattggtct |
6948494 |
T |
|
| Q |
118 |
gcatgcaagattgttatttc---gcggagtatcacgaacactcgttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcg |
214 |
Q |
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|||| ||||||| || |||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6948493 |
gcatacaagattcttctttcaccgctgagtatcatgaacactcattctctttttggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcg |
6948394 |
T |
|
| Q |
215 |
caactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||| ||| | ||||||||||||| ||||||||||||||| |
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|
| T |
6948393 |
caactatcccgagcccaagaaaaatatttgcaagttcgcctttggttatgataattcaatagacactta |
6948325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 61 - 283
Target Start/End: Complemental strand, 6935882 - 6935651
Alignment:
| Q |
61 |
accaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtctgcatgcaagattgttatttc---gcggagtatcacgaacactc |
157 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| ||| || | |
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| T |
6935882 |
accaattctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgc |
6935783 |
T |
|
| Q |
158 |
gttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccaggaa------aaatgtttgcaacttc |
251 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| || || || |||||||||||||||| |
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| T |
6935782 |
tttctctttttggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgtttgcaacttc |
6935683 |
T |
|
| Q |
252 |
acgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||| |
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|
| T |
6935682 |
acttttggttatgataattcaacagacactta |
6935651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 283
Target Start/End: Complemental strand, 6955153 - 6954964
Alignment:
| Q |
94 |
ttggttcatgcaatggattggtctgcatgcaagattgttatttc---gcggagtatcacgaacactcgttctctttctggaatcctgccacaaggacaaa |
190 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| |||| || || ||||| || |||||||||||||| ||||| ||||||||||||||||| |
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| T |
6955153 |
ttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaa |
6955054 |
T |
|
| Q |
191 |
atctgaaacattggtgtcttttcgcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|||||| |||| ||||||||||||| ||| ||||| ||||||| ||||| ||| ||||||||||||||| ||||| ||||||||| |
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|
| T |
6955053 |
gtctgaagcattattgtcttttcgcaattatgccaag---gagaaaaataactgcaagttcgcgtttggttatgataattcaacagacactta |
6954964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 6943434 - 6943387
Alignment:
| Q |
236 |
aaatgtttgcaacttcacgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| | ||||||| |
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|
| T |
6943434 |
aaatgtttgcaacttcacttttggttatgataattcaacaaacactta |
6943387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 1986672 - 1986403
Alignment:
| Q |
17 |
actggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgcaatggattggtc |
116 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1986672 |
actggtgagtaactcacattctatcacccttaccgatccttaccaccaattcttttacaaggacgctggtagggttgttggttcatgcaatggattggtc |
1986573 |
T |
|
| Q |
117 |
tgcatgcaagattgttatttc---gcggagtatcacgaacactcgttctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtcttttc |
213 |
Q |
| |
|
|| || |||||||||| |||| || ||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||| |
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|
| T |
1986572 |
tgtattcaagattgttctttcactgctgagtatcacaaacactcgttctctttttggaatccttccacaaggacaaaatatgaagcattggtgtcttttc |
1986473 |
T |
|
| Q |
214 |
gcaactatcccaagcccaggaaaaatgtttgcaacttcacgtttggttatgatatttcaatagacactta |
283 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||| ||||| ||||||||| |
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|
| T |
1986472 |
gcaactatcccaagcccaagaaaaatatttgcaagttcgcgtttggttatgataattcaacagacactta |
1986403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 15572567 - 15572427
Alignment:
| Q |
74 |
caaggatgctggtagggttgttggttcatgcaatggattggtctgcatgcaagattgttatttcgcgg---agtatcacgaacactcgttctctttctgg |
170 |
Q |
| |
|
|||||| | |||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||| | ||||| ||| |||| |||| ||||||| |
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|
| T |
15572567 |
caaggacggtggtggggttgttggttcatgcaatggattggtctgcttgcaaagttgttctttcgctgctgagtataccgactactccttctgtttctgg |
15572468 |
T |
|
| Q |
171 |
aatcctgccacaaggacaaaatctgaaacattggtgtcttt |
211 |
Q |
| |
|
|| || |||||||||| ||||||||||||||| || ||||| |
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| T |
15572467 |
aaccccgccacaaggaaaaaatctgaaacattagtctcttt |
15572427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 13417563 - 13417435
Alignment:
| Q |
93 |
gttggttcatgcaatggattggtctgcatgcaagattgtt------atttcgcggagtatcacgaacactcgttctctttctggaatcctgccacaagga |
186 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||| ||| || | |||| ||| |||||||||||||||||||| || |||||||||| |
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|
| T |
13417563 |
gttggttcgtgcaatggattggtctgcttgcaaggttgttcatcagattcagctgcgtatatcgaccactcgttctctttctggaacccagccacaagga |
13417464 |
T |
|
| Q |
187 |
caaaatctgaaacattggtgtcttttcgc |
215 |
Q |
| |
|
| |||||||||||| ||||||||||| |
|
|
| T |
13417463 |
atatatctgaaacattaatgtcttttcgc |
13417435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 18515415 - 18515367
Alignment:
| Q |
160 |
tctctttctggaatcctgccacaaggacaaaatctgaaacattggtgtc |
208 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
18515415 |
tctctttctggaaccctgccacaaggactaaatctgatacattagtgtc |
18515367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 14514294 - 14514408
Alignment:
| Q |
91 |
ttgttggttcatgcaatggattggtctgcatgcaagattgttatttcgcgg---agtatcacgaacactcgttctctttctggaatcctgccacaaggac |
187 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | ||||| |||| | | ||||| | |||||| ||||||||||||| |||||||||||||| |
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|
| T |
14514294 |
ttgttggttcatgcaatggattgatctgcttgcatggttgttctttcactgctaagtatattaaccactcgctctctttctggaaccctgccacaaggac |
14514393 |
T |
|
| Q |
188 |
aaaatctgaaacatt |
202 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
14514394 |
taaatctgatacatt |
14514408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 53774338 - 53774387
Alignment:
| Q |
153 |
cactcgttctctttctggaatcctgccacaaggacaaaatctgaaacatt |
202 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||| |||||||| ||||||| |
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|
| T |
53774338 |
cactccttctgtttttggaatcctgccacaaggtcaaaatctaaaacatt |
53774387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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