View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_19 (Length: 280)
Name: NF12839_low_19
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 37135135 - 37135383
Alignment:
| Q |
13 |
gcaaaggtggtaaattaattatggcgaaaacgatctcgaacaacgatgaaaatgttgaggttgacattgattcatcaaaagacgatgttgatgctagaac |
112 |
Q |
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| T |
37135135 |
gcaaaggtggtaaattaattatggcgaaaacgatctcgaacaacgatgaaaatgttgaggttgacattgattcatcaaaagacgatgttgatgctagaac |
37135234 |
T |
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| Q |
113 |
tggcatgaagaagggaccgtggaccccacatgaagacatgattttgacagagtacgtgaataagcatggtgaagggaattggaattttgttcagaagaat |
212 |
Q |
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| T |
37135235 |
tggcatgaagaagggaccgtggaccccacatgaagacatgattttgacagagtacgtgaataagcatggtgaagggaattggaattttgttcagaagaat |
37135334 |
T |
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| Q |
213 |
tcaggattgttaaggtgtggaaaaagctgcagacttagatgggctaatc |
261 |
Q |
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| T |
37135335 |
tcaggattgttaaggtgtggaaaaagctgcagacttagatgggctaatc |
37135383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 33732280 - 33732242
Alignment:
| Q |
212 |
ttcaggattgttaaggtgtggaaaaagctgcagacttag |
250 |
Q |
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| T |
33732280 |
ttcaggcttgttaaggtgtggaaaaagctgcagacttag |
33732242 |
T |
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