View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_20 (Length: 273)
Name: NF12839_low_20
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 33502034 - 33501789
Alignment:
| Q |
12 |
acagacatgggagatgcatgctaggacaatgttgggaatcataaggctacatgcagcaagagaaatgctaagaatatctcctcctgtcccaacaaagttc |
111 |
Q |
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| T |
33502034 |
acagacatgggagatgcatgctaggacaatgttgggaatcataaggctacatgcagcaagagaaatgctaaaaatatctcctcctgtcccaacaaaattc |
33501935 |
T |
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| Q |
112 |
ttaatattttccttatataatgaaataccgaagggtgattatgtgcttgaagagcttccagatagcctcagaaaggttgattgtggacagccatgtagtg |
211 |
Q |
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| T |
33501934 |
ttaatattttccttatataatgaaataccaaagggtgattatgtgcttgaagagcttccagatagcctcaaaaaggttgattgtggacagccatgtagtg |
33501835 |
T |
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| Q |
212 |
caagttctatcctcaagagtatgaaccttgccgggccagtagtttc |
257 |
Q |
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| T |
33501834 |
caagttctatcctcaagagtatgaaccttgccggaccagtagtttc |
33501789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 1218200 - 1217966
Alignment:
| Q |
14 |
agacatgggagatgcatgctaggacaatgttgggaatcataaggctacatgcagcaagagaaatgctaagaatatctcctcctgtcccaacaaagttctt |
113 |
Q |
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| T |
1218200 |
agacatggtagatgcatgttgggaccatagtgggaaccataaggctacatgcagcaagagaaatgctaagaatatcacctcctgtcccaacaaaattctt |
1218101 |
T |
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| Q |
114 |
aatattttccttatataatgaaataccgaagggtgattatgtgcttgaagagcttccagatagcctcagaaaggttgattgtggacagccatgtagtgca |
213 |
Q |
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| T |
1218100 |
aatattttccttatataataaaataccaaagggtggttatgtgcttgaagagcttccagatagcctcacaaaggttaattgtggacaac---------ca |
1218010 |
T |
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| Q |
214 |
agttctatcctcaagagtatgaaccttgccgggccagtagtttc |
257 |
Q |
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| T |
1218009 |
agttctatcctcaagagtatgtaccttgccggcccagtagtttc |
1217966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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