View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_21 (Length: 259)
Name: NF12839_low_21
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 31103583 - 31103815
Alignment:
| Q |
14 |
cacagaaaaaggggatatagtgacctaactttggagcttctagtttccgaaactggttatcgcgaaagtcaaagcaaaggatttttgcagcatcagagcc |
113 |
Q |
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| T |
31103583 |
cacagaaaaaggggatatagtgacctaactttggagcttctagtttccgaaactggttatcgcgaaagtcaaagcaaaggattcttgcagcatcagagcc |
31103682 |
T |
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| Q |
114 |
atcagagctcgtaatccaataataaacaccgttaacaagagtgttgtatcttgaaggctgtagccgtgtgaccatagtaataggaggatggctgacgagg |
213 |
Q |
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| T |
31103683 |
atcagagcttgtaatccaataataaacaccgttaacaagagtgttgtatcttgaaggctgtatccgtgtgaccatagtaataggaggatggctgacgagg |
31103782 |
T |
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| Q |
214 |
ggggtccatgattttgtgcttaggtcataaatg |
246 |
Q |
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| T |
31103783 |
ggggtccatgattttgtgcttaggtcataaatg |
31103815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 31107370 - 31107228
Alignment:
| Q |
61 |
cgaaactggttatcgcgaaagtcaaa-gcaaaggatttttgcagcatcagagccatcagagctcgtaatccaataataaacaccgttaacaagagtgttg |
159 |
Q |
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| T |
31107370 |
cgaaactggttattgcggaagtcaaaagcagagaatgtttgtagcatgatagcaatcagagctcgtaatttaattataaacaccgttaacaagagtgttg |
31107271 |
T |
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| Q |
160 |
tatc-ttgaaggctgtagccgtgtgaccatagtaataggagga |
201 |
Q |
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| T |
31107270 |
tatctttggaggttgttgaggtgtgaccatagtaagaggagga |
31107228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 31097137 - 31097185
Alignment:
| Q |
122 |
tcgtaatccaataataaacaccgttaacaagagtgttgtatcttgaagg |
170 |
Q |
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| T |
31097137 |
tcgtaatccaatgataaacaccgttagcaagagtgttgtatcttgaagg |
31097185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 31097064 - 31097124
Alignment:
| Q |
43 |
tttggagcttctagtttccgaaactggttatcgcgaaagtcaaagcaaaggatttttgcag |
103 |
Q |
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| T |
31097064 |
tttggagctttaagttgacgaaactggttattgcgaaagtcaaagcagatgatgtttgcag |
31097124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 7495389 - 7495427
Alignment:
| Q |
124 |
gtaatccaataataaacaccgttaacaagagtgttgtat |
162 |
Q |
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| T |
7495389 |
gtaatccaatgataaacaccattaacaagagtgttgtat |
7495427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 7873423 - 7873377
Alignment:
| Q |
124 |
gtaatccaataataaacaccgttaacaagagtgttgtatcttgaagg |
170 |
Q |
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| T |
7873423 |
gtaatccaatgataaacgccgttaacaagagtgttatatctagaagg |
7873377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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