View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12839_low_25 (Length: 249)

Name: NF12839_low_25
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12839_low_25
NF12839_low_25
[»] chr3 (4 HSPs)
chr3 (20-239)||(34706801-34707020)
chr3 (33-124)||(9020347-9020438)
chr3 (44-124)||(45775156-45775236)
chr3 (49-121)||(10713080-10713152)
[»] chr7 (4 HSPs)
chr7 (33-124)||(45024428-45024518)
chr7 (33-124)||(48260006-48260096)
chr7 (44-124)||(26201954-26202033)
chr7 (53-120)||(45224335-45224402)
[»] chr1 (2 HSPs)
chr1 (33-124)||(8249243-8249333)
chr1 (81-124)||(46101316-46101359)
[»] chr8 (2 HSPs)
chr8 (36-124)||(40918097-40918184)
chr8 (49-122)||(8051128-8051201)
[»] chr4 (4 HSPs)
chr4 (33-124)||(55960990-55961081)
chr4 (49-108)||(48035824-48035883)
chr4 (51-124)||(50300889-50300962)
chr4 (49-121)||(54682281-54682353)
[»] chr6 (2 HSPs)
chr6 (37-122)||(5091603-5091689)
chr6 (49-124)||(33857958-33858032)
[»] chr2 (3 HSPs)
chr2 (44-122)||(925349-925427)
chr2 (49-124)||(6192267-6192342)
chr2 (81-122)||(5186258-5186299)
[»] chr5 (1 HSPs)
chr5 (49-122)||(26108968-26109042)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 34706801 - 34707020
Alignment:
Q  20 ggacgcatgtgtctagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaac 119  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34706801 ggacgcatgtgtctagttagttttacttcttccaaaccatggaaaatgtttctttcccttgtctttctctccctctcactatctttccatagaaacaaac 34706900  T
Q  120 acaccgttaagtttctgttattgatcatagatcacaagaacttgcttccaacaaaggggagaagcgcttaacctatggacccagaacctcaaaattccga 219  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34706901 acacccttaagtttctgttattgatcacagatcacaagaacttgcttccaacaaaggggagaagcacttaacctatggacccagaacctcaaaattccga 34707000  T
Q  220 aaatagcgattgtacctttg 239  Q
    ||||||||||||||||||||    
T  34707001 aaatagcgattgtacctttg 34707020  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 9020438 - 9020347
Alignment:
Q  33 tagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    ||||| |||| |||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9020438 tagttggtttcacttgttccaaaccatggaaaatgtttctttcccttgtctttctctccccctcactatctttccatagaaacaaacacacc 9020347  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 45775156 - 45775236
Alignment:
Q  44 acttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||| |||||||| |||||||||| ||||||||    |||||||||||| ||||| |||||||| | ||||||||||||||    
T  45775156 acttgttccaaactatggaaaatgtttctttccacaatctttctctccccctcacaatctttcctttgaaacaaacacacc 45775236  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 10713152 - 10713080
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacac 121  Q
    |||||||| | ||||| ||||||||||||||  |||||| ||||| | || ||||||| ||||||||||||||    
T  10713152 ttccaaactaaggaaagtgcttctttcccttaactttctttccctattacaatctttctatagaaacaaacac 10713080  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 45024518 - 45024428
Alignment:
Q  33 tagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  45024518 tagttagtttcacttgttccaaaccatgaaaaatgcttctttcccttgtctttttctccc-ctcactatctatccatagaaacaaacacacc 45024428  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 48260006 - 48260096
Alignment:
Q  33 tagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||||| |||| |||||||| ||| |||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  48260006 tagttagtttcacttgttccaaaccatgaaaaatgcttctttcccttttctttctctccc-ctcactatctatccatagaaacaaacacacc 48260096  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 26201954 - 26202033
Alignment:
Q  44 acttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||| |||||||| ||| |||||| ||||||||    |||||||||||| ||||| ||||||||||||||| |||||||||    
T  26201954 acttgttccaaactatgaaaaatgtttctttccacaatctttctctccc-ctcacaatctttccatagaaataaacacacc 26202033  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 45224335 - 45224402
Alignment:
Q  53 aaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaaca 120  Q
    |||||| |||| ||||||||||||||   ||||||||||  | |||||||||||| ||||||||||||    
T  45224335 aaacaagggaagatgcttctttccctcaactttctctcctccccactatctttccttagaaacaaaca 45224402  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 8249243 - 8249333
Alignment:
Q  33 tagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||||| |||| ||| |||| ||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  8249243 tagttagtttcacttgttctaaaccataaaaaatgcttctttcccttgtctttctctccc-ctcactatctatccatagaaacaaacacacc 8249333  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 46101359 - 46101316
Alignment:
Q  81 tctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||||||||| ||| |||||||||||||||||||||||||    
T  46101359 tctttctctccctcccacaatctttccatagaaacaaacacacc 46101316  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 40918097 - 40918184
Alignment:
Q  36 ttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||  ||| |||||||| |||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  40918097 ttagtttcccttgttccaaaccatggaaaatgtttctttcccttgtcattctctccc-ctcactatctatccatagaaacaaacacacc 40918184  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 8051201 - 8051128
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacaca 122  Q
    |||||||| ||||||||| |||||||||||||||||||| |||  |||||||||| ||||| ||||||||||||    
T  8051201 ttccaaaccatggaaaatacttctttcccttgtctttctttcctcctcactatctatccatggaaacaaacaca 8051128  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 55961081 - 55960990
Alignment:
Q  33 tagttagttttacttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||||||| || |||||||| ||  ||||||||| ||| | ||||||||||||||| |||||||||||||||| |||| |||||||||    
T  55961081 tagttagttttaattgttccaaaccataaaaaatgcttattttctttgtctttctctccccctcactatctttccatggaaataaacacacc 55960990  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 48035824 - 48035883
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttcca 108  Q
    |||||||||| || ||||||||||||||||   |||||||||| |||||| |||||||||    
T  48035824 ttccaaacaaggggaaatgcttctttccctcaactttctctccttctcacaatctttcca 48035883  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 50300962 - 50300889
Alignment:
Q  51 ccaaacaatggaaaatgcttctttcccttgtctttctctccctctc-actatctttccatagaaacaaacacacc 124  Q
    ||||||||  |||| || ||||||||||  ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  50300962 ccaaacaaaagaaagtgtttctttccctcatctttctctcc-tctccactatctttccttagaaacaaacacacc 50300889  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 54682281 - 54682353
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacac 121  Q
    |||||||| | ||||| ||| |||||| |||  |||||| ||||| |||| ||||||| ||||||||||||||    
T  54682281 ttccaaactaaggaaagtgcatctttctcttaactttctttccctatcacaatctttctatagaaacaaacac 54682353  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 5091689 - 5091603
Alignment:
Q  37 tagttttacttcttccaaacaatggaaaatgcttcttt-cccttgtctttctctccctctcactatctttccatagaaacaaacaca 122  Q
    |||||| |||| |||||||| ||||||||||||||||| |||| |||||||||| || |||| |||||||||| |||||||||||||    
T  5091689 tagtttcacttgttccaaacgatggaaaatgcttcttttccctcgtctttctctgcccctcagtatctttccacagaaacaaacaca 5091603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 33858032 - 33857958
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    |||||||| || ||||||| ||||||||    |||||||||||| ||||| |||||||| ||||||||||||||||    
T  33858032 ttccaaactatagaaaatgtttctttccacaatctttctctccc-ctcacaatctttccgtagaaacaaacacacc 33857958  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 925427 - 925349
Alignment:
Q  44 acttcttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacaca 122  Q
    |||| |||||||| ||||||| || ||||||||||  |||||||||||  || || |||||||||||||||||||||||    
T  925427 acttgttccaaactatggaaagtgtttctttccctaatctttctctcctgcttacaatctttccatagaaacaaacaca 925349  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 6192267 - 6192342
Alignment:
Q  49 ttccaaacaatggaaaatgcttctttcccttgtctttctctccctctcactatctttccatagaaacaaacacacc 124  Q
    ||||||||||| ||||||  ||||||||||   |||||| |||  | |||||||||||| ||||||||||||||||    
T  6192267 ttccaaacaatagaaaatatttctttccctcaactttctttcctacccactatctttccttagaaacaaacacacc 6192342  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 5186258 - 5186299
Alignment:
Q  81 tctttctctccctctcactatctttccatagaaacaaacaca 122  Q
    |||||||||||| ||||| |||| ||||||||||||||||||    
T  5186258 tctttctctccccctcacaatctatccatagaaacaaacaca 5186299  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 26108968 - 26109042
Alignment:
Q  49 ttccaaacaatggaaaatgcttcttt-cccttgtctttctctccctctcactatctttccatagaaacaaacaca 122  Q
    |||||||  ||| ||||||||||||| |||||| | |||||||||  |||||||||||||||  |||||||||||    
T  26108968 ttccaaatcatgaaaaatgcttcttttcccttgcccttctctccccttcactatctttccatgaaaacaaacaca 26109042  T

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