View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_27 (Length: 245)
Name: NF12839_low_27
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29122465 - 29122701
Alignment:
| Q |
1 |
tttgcctcacttgctcatatgatcaatggtcaaatgctctttaataatgtgaagatttcgtattcttaaagacgtactttttgtgcttaggaagaaatgt |
100 |
Q |
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| T |
29122465 |
tttgcctcacttgctcatatgatcaatggtcaaatgctctttaataatgtgaagatttcgtattcttaaagacgtactttttgtgcttaggaagaaatgt |
29122564 |
T |
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| Q |
101 |
ccttatattgcannnnnnnnngacagaattgagaatcatgacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagtt |
200 |
Q |
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| T |
29122565 |
ccttatattgcatttttttt-gacagaattgagaatcatgacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagtt |
29122663 |
T |
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| Q |
201 |
cggggatagagtcaagtattggactacagtgaacgagc |
238 |
Q |
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| T |
29122664 |
cggggatagagtcaagtattggactactgtgaacgagc |
29122701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 39631380 - 39631613
Alignment:
| Q |
2 |
ttgcctcacttgctcatatgatcaatggtcaaatgctctttaataatgtgaagatttcgtattcttaaagacgtactttttgtgcttaggaagaaatgtc |
101 |
Q |
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| T |
39631380 |
ttgcctcacttgctcatatgatcaatggtcaaacgcactttaatgacgtgaagatttcatattctaaaaaaagtacttgttgtgcttaggaagaaatgtc |
39631479 |
T |
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| Q |
102 |
cttatattgcannnnnnnnngacagaattgagaatcatgacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagttc |
201 |
Q |
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| T |
39631480 |
cttatattgcatttttt---gtcagaattgagaattaagacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagttc |
39631576 |
T |
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| Q |
202 |
ggggatagagtcaagtattggactacagtgaacgagc |
238 |
Q |
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| T |
39631577 |
ggggatagagtcaagtattggactactgtgaacgagc |
39631613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 39642493 - 39642708
Alignment:
| Q |
20 |
tgatcaatggtcaaatgctctttaataatgtgaagatttcgtattcttaaagacgtactttttgtgcttaggaagaaatgtccttatattgcannnnnnn |
119 |
Q |
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||||||||||||||| || |||||| |||||||||||||||||||| ||| | | |||| ||||||||||| ||||||||||||||| |||| |
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| T |
39642493 |
tgatcaatggtcaaacgcattttaatgatgtgaagatttcgtattctaaaaaaagcacttattgtgcttagggagaaatgtccttatactgcatttttt- |
39642591 |
T |
|
| Q |
120 |
nngacagaattgagaatcatgacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagttcggggatagagtcaagtat |
219 |
Q |
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| T |
39642592 |
--gacagaattgagaattatgacttgaattttgatgcagaaaagacttcacaaactatgcagatgtgtgttttagagagttcggggatagagtcaagtat |
39642689 |
T |
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| Q |
220 |
tggactacagtgaacgagc |
238 |
Q |
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|||||||| |||||||||| |
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| T |
39642690 |
tggactactgtgaacgagc |
39642708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 5219357 - 5219281
Alignment:
| Q |
154 |
tgcagaaaagacttcacaaactatgcagatgtgtgttttagagagttcggggatagagtcaagtattggactacagt |
230 |
Q |
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||||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||| || ||||||| ||||| |
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| T |
5219357 |
tgcagaaaagatttcacagcatatgcagatgtatgctttagagagtttggggatagagttaaacattggaccacagt |
5219281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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