View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_28 (Length: 237)
Name: NF12839_low_28
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 10397497 - 10397289
Alignment:
| Q |
18 |
gaattgtgtggttgtgttgctggctattatttgataagagataagggccaatgagaagtcatgtggtattatttaatgactgtttaattatatccacgat |
117 |
Q |
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| T |
10397497 |
gaattgtgtggttgtgttgctggctattatttgataagagataagggccaatgagaagtcatgtggtattatttaatgattgtttaattatatcaacgat |
10397398 |
T |
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| Q |
118 |
tacggcagactataaaactcatgccaattgccaacttaatggccccgttagaaagatacttcacagccaaaagatacttcacaaccaatatgttaacaat |
217 |
Q |
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| T |
10397397 |
tacggcagactataaaactcatgccaattgccaacttaatggccccgttagaaagatacttcacagccaaaagatacttcacaaccaatatgttaacaat |
10397298 |
T |
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| Q |
218 |
cacagtgaa |
226 |
Q |
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| T |
10397297 |
cacattgaa |
10397289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 27445903 - 27445809
Alignment:
| Q |
24 |
tgtggttgtgttgctggctattatttgataagagataagggccaatgagaagtcatgtggtattatttaatgactgtttaattatatccacgatt |
118 |
Q |
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| T |
27445903 |
tgtggttgtgttttgggctattatttcataagagagaaaggccaatgagatgtcacatggtattgtttcatgattgtctaattatatccaggatt |
27445809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 27559627 - 27559675
Alignment:
| Q |
39 |
ggctattatttgataagagataagggccaatgagaagtcatgtggtatt |
87 |
Q |
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| T |
27559627 |
ggctattatttgataagagataagggccaatgagaggtcacatggtatt |
27559675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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