View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_3 (Length: 633)
Name: NF12839_low_3
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 605; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 31102974 - 31103606
Alignment:
| Q |
1 |
aagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaggtaacaactctctaccatttaaactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31102974 |
aagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaagtaacaactctctaccatttaaactg |
31103073 |
T |
|
| Q |
101 |
agtattgtagcaattttcttatatgtgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagattgatcaa |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31103074 |
agtattgtagcaattttcttgtatgtgacaataacaattcttaatagaaaaatcaataatgaaagagaaaaaagtcaatttattccataagattgatcaa |
31103173 |
T |
|
| Q |
201 |
tgattacaactcttttaaaacagttcttaacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattctaggcaactactttg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31103174 |
tgattacaactcttttcaaacagttcttaacacaaagaattcaacacctctgctaattaacaccatcaactgtaataatatattctaggcaactactttg |
31103273 |
T |
|
| Q |
301 |
acaatggagccatgcttggcacatactcgtaataccaaaaacaagcattctctaaagtatcgagttgaaattggcgaagaacatttccatgatgatcgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31103274 |
acaatggagccatgcttggcacatactcgtaataccaaaaacaagcattctctaaagtatcgagttgaaattggcgaagaacgtttccatgatgatcgca |
31103373 |
T |
|
| Q |
401 |
tgatgtgagctgccgctgcccaaactcgcctacaaggatttcagcaccatcattccaaagaccataaatatgaaaaattgacatttttgtatcaatgtta |
500 |
Q |
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| T |
31103374 |
tgatgtgagctgccgctgcccaaactcgcctacaaggatttcagcaccatcattccaaagaccataaatatgaaaaattgacatttttgtatcaatgtta |
31103473 |
T |
|
| Q |
501 |
tactttttggcccacccgttttgttccagagtccatatttccaaccaaacgattctacacctatattgcacaacataaccaagataaccttttatctcaa |
600 |
Q |
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| T |
31103474 |
tactttttggcccacccgttttgttccagagtccatatttccaaccaaacgattctacacctatattgcacaacataaccaagataaccttttatctcaa |
31103573 |
T |
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| Q |
601 |
agacatcatcacagaaaaaggggatatagtgac |
633 |
Q |
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| T |
31103574 |
agacatcatcacagaaaaaggggatatagtgac |
31103606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38898467 - 38898774
Alignment:
| Q |
1 |
aagacagtggagcctcttactaaggttgctttcttcatgaaattatatattgaaaaaataataatcagtgacaggtaacaactctctaccatttaaactg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||| || | | |||||||||| | |
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| T |
38898467 |
aagacaatggagcctcttactaaggttgctttcttcatgaaattatat--tgagaaaataataatcagggacaagtaacatctttgttccatttaaaccg |
38898564 |
T |
|
| Q |
101 |
agtattgtagcaattttcttatatgtgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagattgatcaa |
200 |
Q |
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| T |
38898565 |
agtattgtagcatttttcttatatgtaataataacaattcttaatagaaaattcaataatgaaagagaaaaaagtcaatttattccataagattgatcaa |
38898664 |
T |
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| Q |
201 |
tgattacaactcttttaaaacagttct-------taacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattctaggcaac |
293 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||| | |
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| T |
38898665 |
tgattacaactcttttcaaacagttctttctaaataacacaaagaattctacacctctgctaattaacaccagcaactgtaataatatatttcaggcagc |
38898764 |
T |
|
| Q |
294 |
tactttgaca |
303 |
Q |
| |
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|||||||||| |
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| T |
38898765 |
tactttgaca |
38898774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 28 - 328
Target Start/End: Original strand, 31108595 - 31108902
Alignment:
| Q |
28 |
gctttcttcatgaaattatatattgaaaaaataataatcagtgacag--gtaacaactctctaccatttaaactgagtattgtagcaattttcttatatg |
125 |
Q |
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||||||||||||||||||||| || | || | |||||| ||| | | ||||||||||| | |||||||||||||||||||||||| ||||||| |||| |
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| T |
31108595 |
gctttcttcatgaaattatatcttaagaagacaataattagtaagaatagtaacaactctgttccatttaaactgagtattgtagcatttttcttctatg |
31108694 |
T |
|
| Q |
126 |
tgacaataacaattcttaatagaaaattcaataatgaaagagaagaaagtcaatttattccataagattgatcaatgattacaactcttttaaaacagtt |
225 |
Q |
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||| |||||| |||||| |||||| ||||||||||| |||| ||||| ||||||||| ||||||||||||||||| | ||||||||| |||||||| |
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| T |
31108695 |
tgatgataacacctcttaacagaaaactcaataatgaa--agaaaaaagttgatttattccttaagattgatcaatgatcaaaactcttttgaaacagtt |
31108792 |
T |
|
| Q |
226 |
ct-------taacacaaagaattcaacacctctgctaattaacaacatcaactgtaataatatattctaggcaactactttgacaatggagccatgcttg |
318 |
Q |
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|| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||| |
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| T |
31108793 |
ctttctaaataacacaaataaaccaacacctctgctaattaacaccatcaactgtaataatatattgtaggcagctactttgacaatagagctatgcttg |
31108892 |
T |
|
| Q |
319 |
gcacatactc |
328 |
Q |
| |
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|||||||||| |
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| T |
31108893 |
gcacatactc |
31108902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 365 - 617
Target Start/End: Original strand, 31108917 - 31109175
Alignment:
| Q |
365 |
ttgaaattggcgaagaacatttccatgatgatcgcatgatgtgagctgccgctgcccaaactcgcctacaaggatttcagcaccatcattccaaagacca |
464 |
Q |
| |
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||||||||||||||| || || ||||||||| |||| ||||||| | ||||| ||| | ||| ||||||||||||||||||||||||||| |||| |
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| T |
31108917 |
ttgaaattggcgaagtgtgttcccttgatgatcgtatgacgtgagcttctgctgctcaacatttcctccaaggatttcagcaccatcattccaaatacca |
31109016 |
T |
|
| Q |
465 |
taaatatgaaaaattgacatttttgtatcaatgttatactttttggcccaccc---gttttgttccagagtccatatttccaaccaaacgattctaca-- |
559 |
Q |
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|||| | |||| |||||| |||| |||| ||||||||||||| ||||||| |||| ||||| | ||||||||||||||||||| || ||| | |
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| T |
31109017 |
taaaaacgaaacattgactgagttgtgtcaaagttatactttttgtcccacccattttttttttccataatccatatttccaaccaaaccatactagaat |
31109116 |
T |
|
| Q |
560 |
-cctatattgcacaacataaccaagataaccttttatctcaaagacatcatcacagaaa |
617 |
Q |
| |
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|||||| | |||||||||||||||| | || |||||||||| || ||||||| |||| |
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| T |
31109117 |
tcctatactccacaacataaccaagagagccctttatctcaatgaggtcatcacggaaa |
31109175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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