View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_31 (Length: 229)
Name: NF12839_low_31
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 4335001 - 4334797
Alignment:
| Q |
12 |
atgaattaaattataccataatattctatccgtaattatatttggatccaactcatcaaccataatttccccattaacgatattttcatttatgaaaatg |
111 |
Q |
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| T |
4335001 |
atgaattaaattataccataatattctatccgtaattatatttggatccaactcattaaccataatttacccattaaccatattttcatttatgaaaatg |
4334902 |
T |
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| Q |
112 |
tcagactaattaatttattttttatcttttagaaacataatttagttgtaaggaacctaatcgattctttaatctaaaaatcaaaaatattagtaaggaa |
211 |
Q |
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| T |
4334901 |
tcaaact-atttatttatttattttcttttagaaacataatttagttgtaaggaacttaatcgattctttaatctgaaaatcaaaaatattagtaaggaa |
4334803 |
T |
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| Q |
212 |
ggagtg |
217 |
Q |
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||||| |
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| T |
4334802 |
agagtg |
4334797 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 15296139 - 15296086
Alignment:
| Q |
19 |
aaattataccataatattctatccgtaattatatttggatccaactcatcaacc |
72 |
Q |
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| T |
15296139 |
aaattacaccataatgttctatccgaaatcatatttggatccaattcattaacc |
15296086 |
T |
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