View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12839_low_34 (Length: 207)
Name: NF12839_low_34
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 2357062 - 2357244
Alignment:
| Q |
15 |
cacagaactataatatattttcagcaagtg---tctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
2357062 |
cacagaactataatatattttcagcaatctcactctacatcatcatggcatacttcttaatttgtgtgctccaaattctcttacagttacaacatcctgt |
2357161 |
T |
|
| Q |
112 |
tactatttttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357162 |
tactatttttccaatctcactcatactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
2357244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 2089149 - 2089323
Alignment:
| Q |
29 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactac--aac-------atcctgttactattt |
119 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||||| ||||||| |||| ||||||||||||||||| |||| || | | || ||||| ||||| |
|
|
| T |
2089149 |
atatattctgcaagtgtctacatgattatggcattcttcttagtttgggtgctccaaactctcttacaacaacctatctctagtgattttgttagtattt |
2089248 |
T |
|
| Q |
120 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2089249 |
ttccaatctcactcttactcatgttggggtatgctgtgtcctttttagccttgacactgatttcacggaacattg |
2089323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 1559287 - 1559445
Alignment:
| Q |
20 |
aactataatatattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttactattt |
119 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| || || |||||| ||||| |
|
|
| T |
1559287 |
aactatactttattttcagcaagtgtctacatcattatggcatacttcttagtttgtctgctccaaa------tg----------attctgttagtattt |
1559370 |
T |
|
| Q |
120 |
ttccaatctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttcaaggaacattg |
194 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1559371 |
tccaaatctcactcttactcttgttggggtatgctttgtcctttttagccttgacactgatttcactgaacattg |
1559445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 2073499 - 2073341
Alignment:
| Q |
29 |
atattttcagcaagtgtctacatcatcatggcatacttcttaatttgtgtgctccaaactctcttgcaactacaacatcctgttac---tatttttccaa |
125 |
Q |
| |
|
|||| ||| |||||||||||||| || ||||||||||||||| |||| ||||||||||||||||| |||| || |||| | | | |||| || | |
|
|
| T |
2073499 |
atatattctgcaagtgtctacatgattatggcatacttcttagtttgggtgctccaaactctcttacaacaacctattcctaattctggtcttttcccta |
2073400 |
T |
|
| Q |
126 |
tctcactcttactcttgttggggtatgctgtttcctttctagccttgacactgatttca |
184 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
2073399 |
tctcactcttgctctcgttggggtgtgctgtttcttttttagcgttgacactgatttca |
2073341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University