View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_36 (Length: 203)
Name: NF12839_low_36
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 4740377 - 4740202
Alignment:
| Q |
17 |
ataaaaatcattgaaacaaagaaacaaaacatagaacttctacaatataaagtgatcaataaatttggttctattgcaagcttacgagaag--nnnnnnn |
114 |
Q |
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| T |
4740377 |
ataaaaatcattgaaacaaagaaacaaaacatagaacttctacaatataaagtgatcaataaatttggttctattgcaagcttaagagaagaagaaaaaa |
4740278 |
T |
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| Q |
115 |
ntggtcaaaattattaagtatgttaatttattgattctctttattcccatttttcttgtggtaactgatgtcagtg |
190 |
Q |
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| T |
4740277 |
atggtcaaaattattaagtatgttaatttattgattctctttatttccatttttcttgtggtaactgatgtcagtg |
4740202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 4745525 - 4745451
Alignment:
| Q |
116 |
tggtcaaaattattaagtatgttaatttattgattctctttattcccatttttcttgtggtaactgatgtcagtg |
190 |
Q |
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| T |
4745525 |
tggtcaaaattattaagtatgttaatctattgatcctctttatttccatttttcttgttgtaactgatgttagtg |
4745451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 4732041 - 4731954
Alignment:
| Q |
19 |
aaaaatcattgaaacaaagaaacaaaacatagaacttctacaatataaagtgatcaataaatttggttctattgcaagcttacgagaa |
106 |
Q |
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| T |
4732041 |
aaaactcattgaaaaaaagaaacaaaacatagaacttttacaacataaagtgatcaataaatttctatctactacaagcttacgagaa |
4731954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 4752390 - 4752237
Alignment:
| Q |
17 |
ataaaaatcattgaaacaaagaaacaaaacatagaacttctacaatataaagtgatcaataaatttggttctattgc-aagcttacgagaagnnnnnnnn |
115 |
Q |
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| T |
4752390 |
ataaaaaacattgagaagaagaaacaaaacata-aacttttacaatataaagtgatcaataaatttctttctattgcaaaacttactagaa---aaaata |
4752295 |
T |
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| Q |
116 |
tggtcaaaattattaagtatgttaatttattgattctctttattcccatttttcttgt |
173 |
Q |
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| T |
4752294 |
tgggcaaaattattaagtttgttaatttatcgatcctctttattttcatgtttcttgt |
4752237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 4734949 - 4734886
Alignment:
| Q |
19 |
aaaaatcattgaaacaaagaaacaaaacatagaacttctacaatataaagtgatcaataaattt |
82 |
Q |
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| T |
4734949 |
aaaaatgattgaaacaaagaaacaaaacgtagaacttttacaacataaaatgatcaataaattt |
4734886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 4734843 - 4734781
Alignment:
| Q |
120 |
caaaattattaagtatgttaatttattgattctctttattcccatttttcttgtggtaactga |
182 |
Q |
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| T |
4734843 |
caaaattattaagtttattaatttatcgatcctctttattttcatgtttcttgttgtaactga |
4734781 |
T |
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