View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_4 (Length: 616)
Name: NF12839_low_4
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_4 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 310 - 616
Target Start/End: Complemental strand, 19710071 - 19709765
Alignment:
| Q |
310 |
ctcttaactacatattaattctttactccgccatatatttagcaacatgaaattcggttccgccttgaattgtttaaaaatagcaatccgaatttcagtt |
409 |
Q |
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| T |
19710071 |
ctcttaactacatattaattctttactccgccatatatttagcaacatgaagttcggttccgccttgaattgtttaaaaatagcaatccgaatttcagtt |
19709972 |
T |
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| Q |
410 |
tttgctattccaattgtcaaaaagaagaaaaactaacaaccaccaattatataaaggggggagaaattatattttaacacaaataactaaaaaccataaa |
509 |
Q |
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| T |
19709971 |
tttgctattccaattgtcaaaaagaagaaaaactaacaaccaccaattatataaaggggggagcaattatattttaacacaaataactaaaaaccataaa |
19709872 |
T |
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| Q |
510 |
cacttcatcaaaagaaaaggatcacaacccacttgggttggcttgtgggtattggattaggatctaagagcgtgttccttttcaaggtttcatgttcaat |
609 |
Q |
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| T |
19709871 |
cacttcatcaaaacaaaaggatcacaacccacttgggttggcttgtgggtattggattaggatttaagagcgtgcttcttttcaaggtttcatgtttaat |
19709772 |
T |
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| Q |
610 |
tctcttc |
616 |
Q |
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| T |
19709771 |
tctcttc |
19709765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 19710340 - 19710216
Alignment:
| Q |
19 |
aattgaaccctccatgcaattgaaagaagtgaagctttccatgagacaagtttcagtttcaccttgtctgcaataggttgaagataaactttcttgggct |
118 |
Q |
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| T |
19710340 |
aattgaaccctccatgcaattgaaagaagtgaagctttccatgatacaagtttcagtttcaccttgtctgcaataggttgaagataaactttcttgggct |
19710241 |
T |
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| Q |
119 |
tgcctctaaaaatagggacatcaag |
143 |
Q |
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| T |
19710240 |
tgcctctaaaaatagggacaccaag |
19710216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 19710220 - 19710152
Alignment:
| Q |
175 |
ccaagcatatcagagatgtgaagaagcctagcattgctaatagctccagcatagtagttgatttgttaa |
243 |
Q |
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| T |
19710220 |
ccaagcatatcagagatgtgaagaagcctagcattgctaatagctccagtatagtagttgatttgttaa |
19710152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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