View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_5 (Length: 552)
Name: NF12839_low_5
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Complemental strand, 3567127 - 3566594
Alignment:
| Q |
11 |
catagggcaaccaatcacattaaaactccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagca |
110 |
Q |
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| T |
3567127 |
catagggcaaccaatcacattaaaaatccagctatctctaacaattgtggaacaatcaggatgagaaacccacattctcatgaatttgaactgagaagca |
3567028 |
T |
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| Q |
111 |
aaaagtatgttattaacttgaacatctagcaaaagagattagttgtc-agaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaac |
209 |
Q |
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| T |
3567027 |
aaaagtatgttattaacttgaacatctagcaaaagagattagttgtctagaatgatgttttgtgagggttgataatgtaagggaatgacaagaatctaac |
3566928 |
T |
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| Q |
210 |
catgattgattagtgatgtctctattcaaccttctttatgtgcttatattgattcccttaccattggcccaagtgtattcaacaccattggcaggcaaat |
309 |
Q |
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| T |
3566927 |
catgactgattagtgatgtctctatccaaccttctttatgtgcttatattgattcccttaccattggctcaagtgtattcaacaccattggcaggcaaat |
3566828 |
T |
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| Q |
310 |
gaactaaagcatttctgtcgatccaagacttaaactcttccataggtgacctcgtaggagtgattcttcacctatgctcatgagctccaataatagagtt |
409 |
Q |
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| T |
3566827 |
gaactaaagcatttctgtcgatacaagacttaaactcttccataggtgacctggtaggagtgattcttcacctatgctcatgagctccaataatagagtt |
3566728 |
T |
|
| Q |
410 |
aaaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagat-nnnnnnnttccataattgtcttctttttctgtaatctgtggaagcat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3566727 |
aaaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagataaaaaaaattccataattgtcttctttttctgtaatctgtggaagcat |
3566628 |
T |
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| Q |
509 |
acacaacagatataacaaaagtttgatgtccatc |
542 |
Q |
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| T |
3566627 |
acacaacagatataacaaaagtttggtgtccatc |
3566594 |
T |
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