View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12839_low_7 (Length: 396)
Name: NF12839_low_7
Description: NF12839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12839_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 33442009 - 33441640
Alignment:
| Q |
19 |
tcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33442009 |
tcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctg |
33441910 |
T |
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| Q |
119 |
gtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttccaaatatttaacagag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33441909 |
gtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagag |
33441810 |
T |
|
| Q |
219 |
attgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgttttttccccagttagttattactaataattagccccct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33441809 |
attgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgtttttttcccagttagttattactaataattagccccct |
33441710 |
T |
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| Q |
319 |
tcattattatttatgttatttgctt----tggtgaatgtaatatcatcttgttattgatgattaataaaa |
384 |
Q |
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| T |
33441709 |
tcattattatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaa |
33441640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 33452229 - 33451860
Alignment:
| Q |
19 |
tcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452229 |
tcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttctccatcaccatcacttgacctg |
33452130 |
T |
|
| Q |
119 |
gtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccgtgctgccaaagaagcttttccaaatatttaacagag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33452129 |
gtgacacctgaagcaccgccttcgaatgcaccatggcctgctagtagcgttccccgtcgatccctgctgccaaagaagcttttccaaatatttaacagag |
33452030 |
T |
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| Q |
219 |
attgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgttttttccccagttagttattactaataattagccccct |
318 |
Q |
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| T |
33452029 |
attgatagctgtttaagattggatgttaaccgatcatgtgtgatgtttcaaggagaggctgtttttttcccagttagttattactaataattagccccct |
33451930 |
T |
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| Q |
319 |
tcattattatttatgttatttgctt----tggtgaatgtaatatcatcttgttattgatgattaataaaa |
384 |
Q |
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|||||||||||||| | |||| || |||||||||||||||||| |||||||| ||||||||||||| |
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| T |
33451929 |
tcattattatttatttagtttgtttacattggtgaatgtaatatcattttgttatttatgattaataaaa |
33451860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 33399693 - 33399629
Alignment:
| Q |
19 |
tcactgcgaaaatggacaaaagcttttcataactgtgcagccaaaacaagatggttggtctccag |
83 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
33399693 |
tcactgcgaaaatggacaaaagcttttcataaatgttttaccaaaacaagatggttggtatccag |
33399629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 33395790 - 33395729
Alignment:
| Q |
35 |
caaaagcttttcataactgtgcagccaaaacaagatggttggtctccagtaccttcaccttc |
96 |
Q |
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|||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
33395790 |
caaaagcttttcataaacgtgcagccaccacagtttggttggtctccagtaccctcaccttc |
33395729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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