View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_high_14 (Length: 326)
Name: NF1283_high_14
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 54241246 - 54241120
Alignment:
| Q |
22 |
ccaagaatataaatagacacgttatcaaatttagggacacaatgttaaagcatgaatgaaatagggacgcagttgtgacattgtttgtttgttttcattt |
121 |
Q |
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| T |
54241246 |
ccaaaaatataaatagacacgttatcaaatttagggacacaatgttaaagcatgaatgaaatagggacgcagttgtgacattgtttgtttgttttcattt |
54241147 |
T |
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| Q |
122 |
atagactttctaactataaagtgcaat |
148 |
Q |
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| T |
54241146 |
atagactttctaactataaagtgcaat |
54241120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 54240824 - 54240734
Alignment:
| Q |
158 |
tataaagtaaaactatttacacgtttaaacatgaaattttatactgacagaattaattcaacttaaatttctttaaagaaaatttattagg |
248 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54240824 |
tataaagtaaaattatttacacgtttaaacatgaaattttatactgatagaattaattcaacttaaatttatttaaagaaaatttattagg |
54240734 |
T |
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