View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_high_3 (Length: 642)
Name: NF1283_high_3
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 57 - 631
Target Start/End: Original strand, 4028661 - 4029232
Alignment:
| Q |
57 |
ttggcaaagactcacttattatcagatttaaatgcctttacactattctgcctagaacctgtgttgtgctcagaggccagaactgatgtaaaagaacgtg |
156 |
Q |
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| T |
4028661 |
ttggcaaagactcacttattatcggatttaaatgcctttacactattctgcctagaacctgtgttgtgctcagaggccagaactgatgtaaaagaacgtg |
4028760 |
T |
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| Q |
157 |
atgtcatttacagtttctgaaatgaaaagtgacttctcattttaccattttcatcaaacaccaacgtgattcagtgattttgaaaatttaatggatctaa |
256 |
Q |
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| T |
4028761 |
atgtcatttacagtttctgaaatgaaaagtgacttctcattttaccattttcatcaaacaccaacgtgattcagtgattttgaaaatttaatggatctaa |
4028860 |
T |
|
| Q |
257 |
taattctatggtcaaaattagaaattcatcaaacactcatcatcaattattagtttgattcttggtggtaacgatcatttcaaagtgtgattaaacatat |
356 |
Q |
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| T |
4028861 |
t---tctatggtcaaaattagatattcatcaaacactcatcatcaattattagtttgattcttggtggtaatgatcatttcaaagtgtgattaaacatat |
4028957 |
T |
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| Q |
357 |
ttatattttgtttcattcttgaagagattgacattgattaattaattaaataatggctttatcaaagaacaaatattcatcatgcaaacccctcgtgcat |
456 |
Q |
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| T |
4028958 |
ttatattttgtttcattcttgaagagattgacattgattaattaattaaataatggctttatcaaagaacaaatattcatcatgcaaacccctcgtgcat |
4029057 |
T |
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| Q |
457 |
attcttgtgattnnnnnnnnnnnnnnnncatcattaattaataatatgccatttacttttagagtgatttgatcaaagatattcttttgggtgaacattt |
556 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4029058 |
attgttgtgattaaaataaaataaaaaacatcattaattaataatatgccatttacttttagagtgatttgatcaaagatattcttttgggtgaacattt |
4029157 |
T |
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| Q |
557 |
aatcaaggttagtatctttcttcttcagtgtgtgcgtgtgtaacatcttgcacttttggtgtatatattgtctgt |
631 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4029158 |
aatcaaggttagtatctttcttcttcagtgtgtgcgtgtgtaatatcttgcacttttggtgtatatattgtctgt |
4029232 |
T |
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