View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_high_8 (Length: 390)
Name: NF1283_high_8
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 29 - 378
Target Start/End: Original strand, 39558757 - 39559107
Alignment:
| Q |
29 |
actaagcatcaaatgatcgcaagcannnnnnnacgttaacatttaaaactatagatgataaatactttttgataattcaaatttaatactaacggattca |
128 |
Q |
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| T |
39558757 |
actaagcatcaaatgatcgcaaacatttttttacgttaacatttaaaactatagatgataaatactttttgataattcaaatttaataataacagattca |
39558856 |
T |
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| Q |
129 |
tgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatattaaatattttgttaaccttatacaacaaa |
228 |
Q |
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| T |
39558857 |
tgattgcatggaatctctttggagtaaatgttggacaaattattaacaaccttatgttacagatgaaatattaaatattttgttaaccttatacaacaaa |
39558956 |
T |
|
| Q |
229 |
ttccca-catcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaagggtgattgagatgtagcattttgtttt |
327 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39558957 |
ttcccaccatcctcacctctatctattatgccccactatatatgtataataaaaatagaagatccatgcaaagggtgattgagatgtagcattttgtttt |
39559056 |
T |
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| Q |
328 |
ctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559057 |
ctaccatgatgacatgtacactttgattgattagatcatgtgtctggccta |
39559107 |
T |
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