View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_10 (Length: 405)
Name: NF1283_low_10
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 154 - 396
Target Start/End: Complemental strand, 4372724 - 4372482
Alignment:
| Q |
154 |
aaggaaaacaagaaatgggagaaggttctcgcgccatcgattgctcataaccacgatgctgattcaactagagtaccggtttttgtgatgttgccattag |
253 |
Q |
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| T |
4372724 |
aaggaaaacaagaaaagggagaaggttctcgcgccatcgattgctcataaccacgatgctgattcaactagagtaccggtgtttgtgatgttgccattag |
4372625 |
T |
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| Q |
254 |
acacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgc |
353 |
Q |
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| T |
4372624 |
acacggtaacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgc |
4372525 |
T |
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| Q |
354 |
ttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
396 |
Q |
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| T |
4372524 |
ttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
4372482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 161 - 396
Target Start/End: Complemental strand, 4365124 - 4364889
Alignment:
| Q |
161 |
acaagaaatgggagaaggttctcgcgccatcgattgctcataaccacgatgctgattcaactagagtaccggtttttgtgatgttgccattagacacggt |
260 |
Q |
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| T |
4365124 |
acaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatggtgattcgaatagagtaccggtgtttgtgatgttgccattagacacggt |
4365025 |
T |
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| Q |
261 |
aacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtgg |
360 |
Q |
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| T |
4365024 |
aacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtgg |
4364925 |
T |
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| Q |
361 |
ggtttggtcgaaaaagatggtccaatgaagtataat |
396 |
Q |
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| T |
4364924 |
ggtttggtcgaaaaagatggtccaatgaagtataat |
4364889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 4372825 - 4372739
Alignment:
| Q |
77 |
acaaagtttcttgtccgaaattcaaacctttgtttcatctcaaagcaaagagttcaatgcaagaaacacatttcacaaaggaaaaca |
163 |
Q |
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| T |
4372825 |
acaaagtttcttgtccgaaattcaaacctttgtttcatctcaaagcaaagagttcaatgcaagaaacacatttcacaaaggaaaaca |
4372739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 4365194 - 4365155
Alignment:
| Q |
115 |
ctcaaagcaaagagttcaatgcaagaaacacatttcacaa |
154 |
Q |
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| T |
4365194 |
ctcaaagcaaagagttcaatacaagaaactcatttcacaa |
4365155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 226 - 380
Target Start/End: Original strand, 41042491 - 41042645
Alignment:
| Q |
226 |
gtaccggtttttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtg |
325 |
Q |
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||||| |||||||||||| | ||||| || || ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| |
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| T |
41042491 |
gtaccagtttttgtgatgcttccattggatacagtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtg |
41042590 |
T |
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| Q |
326 |
ctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatgg |
380 |
Q |
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| T |
41042591 |
ctggagttgaaggggtgatggttgatgtttggtggggtttggttgaaaaagatgg |
41042645 |
T |
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