View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_14 (Length: 371)
Name: NF1283_low_14
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 24291719 - 24292002
Alignment:
| Q |
1 |
ctcgttgtaatatatatagtgtgttgataaatttatatactaccattcgctttgaattttgtacttcaatttgacatttaatgcttaatataaataaaag |
100 |
Q |
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| T |
24291719 |
ctcgttgtaatatatatagtgtgttgataaatttatatactaccattcgctttgaattttgtacttcaatttgacatttaatgcttaatataaataaaag |
24291818 |
T |
|
| Q |
101 |
taaatttgacagcagatcgttttaagttccattcaggcagatgacagttttttcttttctatcgccattcagttgcttagtgagcttcttcactgtgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291819 |
taaatttgacagcagatcgttttaagttccattcaggcagatgacagttttttcttttctatcgccattcagttgcttagtgagcttcttcactgtgaag |
24291918 |
T |
|
| Q |
201 |
tcatccttatcattcccgtgatttaattattccatcttctttcttatgaatatgcaggttaagtcaagaatgatgggagattct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291919 |
tcatccttatcattcccgtgatttaattattccatcttctttcttatgaatatgcaggttaagtcaagaatgatgggagattct |
24292002 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 5772766 - 5772729
Alignment:
| Q |
247 |
tgaatatgcaggttaagtcaagaatgatgggagattct |
284 |
Q |
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||||||||||||| ||||| |||||||||||||||||| |
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| T |
5772766 |
tgaatatgcaggtcaagtcgagaatgatgggagattct |
5772729 |
T |
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