View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1283_low_19 (Length: 328)

Name: NF1283_low_19
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1283_low_19
NF1283_low_19
[»] chr7 (4 HSPs)
chr7 (62-285)||(45243683-45243906)
chr7 (94-285)||(45230416-45230611)
chr7 (160-285)||(45237934-45238059)
chr7 (69-173)||(45238070-45238170)
[»] chr1 (4 HSPs)
chr1 (111-278)||(29467764-29467931)
chr1 (121-249)||(29443315-29443443)
chr1 (119-278)||(29453296-29453455)
chr1 (119-278)||(29423256-29423415)
[»] chr2 (25 HSPs)
chr2 (123-278)||(9328590-9328745)
chr2 (123-247)||(10335866-10335990)
chr2 (123-278)||(8573501-8573656)
chr2 (135-278)||(9284198-9284341)
chr2 (123-242)||(9291964-9292083)
chr2 (123-285)||(9061137-9061299)
chr2 (123-248)||(9065589-9065714)
chr2 (114-249)||(16269109-16269244)
chr2 (172-278)||(9320973-9321079)
chr2 (114-235)||(9364662-9364783)
chr2 (129-278)||(10353100-10353249)
chr2 (123-271)||(10371856-10372004)
chr2 (125-248)||(12012544-12012667)
chr2 (123-253)||(7115638-7115768)
chr2 (125-233)||(12006116-12006224)
chr2 (123-249)||(9316039-9316159)
chr2 (123-233)||(9274557-9274667)
chr2 (111-277)||(11987474-11987637)
chr2 (123-274)||(10347780-10347931)
chr2 (176-248)||(12018937-12019009)
chr2 (151-234)||(17566107-17566190)
chr2 (151-234)||(7611974-7612057)
chr2 (172-232)||(8579532-8579592)
chr2 (111-165)||(8576393-8576447)
chr2 (124-153)||(7612070-7612099)
[»] chr3 (2 HSPs)
chr3 (112-285)||(37462473-37462649)
chr3 (124-232)||(39427680-39427791)
[»] chr8 (1 HSPs)
chr8 (123-249)||(41966701-41966827)
[»] chr4 (2 HSPs)
chr4 (129-248)||(26574882-26575001)
chr4 (172-218)||(561273-561319)
[»] scaffold0667 (1 HSPs)
scaffold0667 (111-285)||(4455-4629)
[»] chr5 (1 HSPs)
chr5 (161-233)||(36224454-36224526)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 62 - 285
Target Start/End: Complemental strand, 45243906 - 45243683
Alignment:
Q  62 cctcttacctcttccagagattgaaaatgagactgagagttgtttcaatattgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaa 161  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45243906 cctcttacctctttcagagattgaaaatgagactgtgagttgtttcaatattgatgatgcggttttgggagagtgtctttgtatgattgtgaattatcaa 45243807  T
Q  162 actaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttgg 261  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45243806 actaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttgg 45243707  T
Q  262 aatctttgaggcctttatattatt 285  Q
    |||||||||||||||||| |||||    
T  45243706 aatctttgaggcctttatgttatt 45243683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 94 - 285
Target Start/End: Complemental strand, 45230611 - 45230416
Alignment:
Q  94 ctgagagttgtttcaatattgatgctgcggttttggga-gagtgtctttgtatgattgtgaattatcaaactaatgaaattgatg---tttgggtgatga 189  Q
    |||||||||||||| | |||||| |||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  45230611 ctgagagttgtttcgacattgatactggcgttttgggaagagtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatga 45230512  T
Q  190 aagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatattatt 285  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |||||    
T  45230511 aagaatatggttctagagatagttggtgtaaactttttactttggttaaatcgtggttcaattttcatttggtatctttgagacctttatgttatt 45230416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 45238059 - 45237934
Alignment:
Q  160 aaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcattt 259  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |    
T  45238059 aaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatct 45237960  T
Q  260 ggaatctttgaggcctttatattatt 285  Q
    | |||  ||||||||||||| |||||    
T  45237959 gaaattgttgaggcctttatgttatt 45237934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 45238170 - 45238070
Alignment:
Q  69 cctcttccagagattgaaaatgagactgagagttgtttcaatattgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatg 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |||||||| ||    
T  45238170 cctcttccagagattgaaaatgagactgagagttgtttcaatattgatgctgcggttttgggagagtgtc----tatgattgtgaattgtcaaactactg 45238075  T
Q  169 aaatt 173  Q
    |||||    
T  45238074 aaatt 45238070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 111 - 278
Target Start/End: Original strand, 29467764 - 29467931
Alignment:
Q  111 attgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagata 210  Q
    ||||||| |||||||||||||| ||||||||   ||||||||||||||||||||| | |||||||||||||| |||||||||||||||| | ||||||||    
T  29467764 attgatgttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagata 29467863  T
Q  211 tttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
     |||| ||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||    
T  29467864 gttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggccttta 29467931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 249
Target Start/End: Original strand, 29443315 - 29443443
Alignment:
Q  121 cggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaa 220  Q
    ||||| ||| || |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| | ||||||||  ||||||||    
T  29443315 cggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaa 29443414  T
Q  221 actttttactttggttaaatcgtgtttca 249  Q
    |||||||||||||| | ||||||||||||    
T  29443415 actttttactttggctgaatcgtgtttca 29443443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 29453296 - 29453455
Alignment:
Q  119 tgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgt 218  Q
    ||||||||||| || |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| | ||||||||  ||||||    
T  29453296 tgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt 29453395  T
Q  219 aaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
     |||||||||||||||   |||| ||||||| ||| | |||| || ||||| ||||||||    
T  29453396 gaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggccttta 29453455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 278
Target Start/End: Complemental strand, 29423415 - 29423256
Alignment:
Q  119 tgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgt 218  Q
    ||||||| ||| || ||| |||||||||| ||||||||||||||||  | |||||||||||||| |||||||||||||||| | ||||||||  ||||||    
T  29423415 tgcggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgt 29423316  T
Q  219 aaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
    ||||||||||||||||   ||||||||||||  || | |||| || ||||||||| ||||    
T  29423315 aaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggctttta 29423256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 9328745 - 9328590
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| ||||||||| |||| | |||||||| |||||| ||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||    
T  9328745 gttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaac 9328646  T
Q  223 tttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
    |||||||| ||||||||||||||||| |||| | |||| |||||||||||||||||    
T  9328645 tttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggccttta 9328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 10335990 - 10335866
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| |||||||||| ||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  10335990 gttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaac 10335891  T
Q  223 tttttactttggttaaatcgtgttt 247  Q
     ||||||||||||||||||||||||    
T  10335890 attttactttggttaaatcgtgttt 10335866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 123 - 278
Target Start/End: Original strand, 8573501 - 8573656
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||| | |||||||||||||  |||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  8573501 gttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaac 8573600  T
Q  223 tttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
    |||||||||| |||||||||||||||| |   |||||  |||||| ||||||||||    
T  8573601 tttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggccttta 8573656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 135 - 278
Target Start/End: Original strand, 9284198 - 9284341
Alignment:
Q  135 tgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttgg 234  Q
    |||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9284198 tgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttactttgg 9284297  T
Q  235 ttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
    |||||||  | |||| ||| | |||| |||||||||||||||||    
T  9284298 ttaaatcacggttcactttacgtttgaaatctttgaggccttta 9284341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 9292083 - 9291964
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    ||||| ||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  9292083 gttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttggtgtaaac 9291984  T
Q  223 tttttactttggttaaatcg 242  Q
    ||||||||||||||||||||    
T  9291983 tttttactttggttaaatcg 9291964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 285
Target Start/End: Original strand, 9061137 - 9061299
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||| | ||||||||| |||  |||||||||| || ||| | ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  9061137 gttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaac 9061236  T
Q  223 tttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatattatt 285  Q
    ||||||||||||||||||||||||||||||  | |||||| | ||||||||| |||| |||||    
T  9061237 tttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttatt 9061299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 9065589 - 9065714
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| |||||||||||||||| |||||||| |||||| | | ||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  9065589 gttttgggagggtgtctttgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaac 9065688  T
Q  223 tttttactttggttaaatcgtgtttc 248  Q
    ||||||||||||| ||||| ||||||    
T  9065689 tttttactttggtcaaatcttgtttc 9065714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 16269244 - 16269109
Alignment:
Q  114 gatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatattt 213  Q
    |||| ||| ||||||||||  ||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||||| ||||| | |||||||| ||    
T  16269244 gatgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagtt 16269145  T
Q  214 ggtgtaaactttttactttggttaaatcgtgtttca 249  Q
    |||| ||||||||||| |||||||||||||||||||    
T  16269144 ggtgcaaactttttaccttggttaaatcgtgtttca 16269109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 9321079 - 9320973
Alignment:
Q  172 ttgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgag 271  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| | |||| | |||| ||||||||||    
T  9321079 ttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgag 9320980  T
Q  272 gccttta 278  Q
    |||||||    
T  9320979 gccttta 9320973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 9364783 - 9364662
Alignment:
Q  114 gatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatattt 213  Q
    |||| |||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |  | ||||| ||    
T  9364783 gatgttgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagtt 9364684  T
Q  214 ggtgtaaactttttactttggt 235  Q
    |||||||| | |||||||||||    
T  9364683 ggtgtaaattgtttactttggt 9364662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 278
Target Start/End: Complemental strand, 10353249 - 10353100
Alignment:
Q  129 ggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaacttttta 228  Q
    |||| ||||||||||||||||||| ||||| ||  || | ||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||    
T  10353249 ggagggtgtctttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaacttttta 10353150  T
Q  229 ctttggttaaatcgtgtttcaattttcatttggaatctttgaggccttta 278  Q
    || |||||||||| | |||| |||| | |||| |||||||||||| ||||    
T  10353149 ctgtggttaaatcttctttcgatttacctttgcaatctttgaggctttta 10353100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 271
Target Start/End: Complemental strand, 10372004 - 10371856
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    ||||| |||| |||||||||||||| |||| ||||| |||||| | |  ||||| |||||||||||||||||||||| |||||||||| |||||||||||    
T  10372004 gttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaac 10371905  T
Q  223 tttttactttggttaaatcgtgtttcaattttcatttggaatctttgag 271  Q
    |||||||||||||||||||  ||||   ||| | |||||||||||||||    
T  10371904 tttttactttggttaaatcaagtttgggtttacctttggaatctttgag 10371856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 248
Target Start/End: Original strand, 12012544 - 12012667
Alignment:
Q  125 tttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactt 224  Q
    |||||||| |||||||||||||||||||||| ||||||||| | | |||||||| | |||||||||||||||||| | || ||||| |||||||||||||    
T  12012544 tttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactt 12012643  T
Q  225 tttactttggttaaatcgtgtttc 248  Q
    |||||||||||  |||||||||||    
T  12012644 tttactttggtggaatcgtgtttc 12012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 7115638 - 7115768
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| |||||||||||||||||||||||||  ||||| | |||  |||||||||||||||||| ||||||| |||||||| |  ||||||||||    
T  7115638 gttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtgtaaac 7115737  T
Q  223 tttttactttggttaaatcgtgtttcaattt 253  Q
    ||||||| |||||||| ||||||||| ||||    
T  7115738 tttttacattggttaattcgtgtttcgattt 7115768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 12006116 - 12006224
Alignment:
Q  125 tttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactt 224  Q
    |||||||| |||||||||| ||||||||||||||||||||| | | |||||||| |||||||||||||||||||| | || ||||| |||||||||||||    
T  12006116 tttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaactt 12006215  T
Q  225 tttactttg 233  Q
    |||||||||    
T  12006216 tttactttg 12006224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 9316159 - 9316039
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| |||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||| ||||| |||||      |||||||||||    
T  9316159 gttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggatctag------ttggtgtaaac 9316066  T
Q  223 tttttactttggttaaatcgtgtttca 249  Q
    |||||||||||||||| || |||||||    
T  9316065 tttttactttggttaattcatgtttca 9316039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 9274667 - 9274557
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    ||||||| || |||||||||||||| | ||||||||| || || |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  9274667 gttttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgtaaac 9274568  T
Q  223 tttttactttg 233  Q
    |||||||||||    
T  9274567 tttttactttg 9274557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 277
Target Start/End: Original strand, 11987474 - 11987637
Alignment:
Q  111 attgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagata 210  Q
    ||||||| ||| |||||||||| |||||||||| ||| ||||||| |||| |||||    |||||| |||||||||||||||||||||| | ||||||||    
T  11987474 attgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatactaag---attgatatttgggtgatgaaagaatatggatgtagagata 11987570  T
Q  211 tttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttt 277  Q
     ||||||||||||||| || ||| |  |||||||||||  ||| | |||| |||||||||| |||||    
T  11987571 gttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagcccttt 11987637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 10347931 - 10347780
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| |||||||||||| | |||  ||||| ||  || | |||||||||||||||| |||||||||||||| | |||||||| |||||||||||    
T  10347931 gttttgggagggtgtctttgtatcactgtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaac 10347832  T
Q  223 tttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcc 274  Q
    |||||||| ||| | | ||||||||| |||| | |||| |||  ||||||||    
T  10347831 tttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcc 10347780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 12018937 - 12019009
Alignment:
Q  176 tgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttggttaaatcgtgtttc 248  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |  |||||||||||    
T  12018937 tgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttc 12019009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 17566107 - 17566190
Alignment:
Q  151 tgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttgg 234  Q
    ||||||||||||||| | |  |||||||||||||||| ||||||||||| | |||||||| |||||||||| | ||||| ||||    
T  17566107 tgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg 17566190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 7612057 - 7611974
Alignment:
Q  151 tgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttgg 234  Q
    |||||||| |||||| | |  |||||||||||||||||||||||||||| |  | ||||| |||||||||| | ||||||||||    
T  7612057 tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg 7611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8579532 - 8579592
Alignment:
Q  172 ttgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttacttt 232  Q
    |||| ||||||||||||||| ||||||| | |||||||| |||||||||| | ||||||||    
T  8579532 ttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt 8579592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 8576393 - 8576447
Alignment:
Q  111 attgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaacta 165  Q
    ||||||| ||| ||||| |||| |||||||||||||| |||||||||| ||||||    
T  8576393 attgatgttgctgtttttggagggtgtctttgtatgagtgtgaattatgaaacta 8576447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 7612099 - 7612070
Alignment:
Q  124 ttttgggagagtgtctttgtatgattgtga 153  Q
    ||||||||||||||||||||||||||||||    
T  7612099 ttttgggagagtgtctttgtatgattgtga 7612070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 285
Target Start/End: Complemental strand, 37462649 - 37462473
Alignment:
Q  112 ttgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaa---ctaatgaaattgatgtttgggtgatgaaagaatatggctctagaga 208  Q
    |||||| ||| ||||||||||  ||||||||||||| |||||||||| |||   ||| | || |||||||||||||||||||||||||||| ||||||||    
T  37462649 ttgatgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagaga 37462550  T
Q  209 tatttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatattatt 285  Q
    || |||||||||||||| |||| ||| |||||||||||||| ||  | |||| |||||||||||||||||| |||||    
T  37462549 tagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttatt 37462473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 39427791 - 39427680
Alignment:
Q  124 ttttgggagagtgtctttgtatgattgtgaattatca---aactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaa 220  Q
    |||||||| ||||||||||||| | ||||| || | |   ||||||| |  |||||||||||||||||||||||||||| | |||| ||| |||||||||    
T  39427791 ttttgggaaagtgtctttgtattactgtgagttgtaatggaactaataagtttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaa 39427692  T
Q  221 actttttacttt 232  Q
    | | ||||||||    
T  39427691 attgtttacttt 39427680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 41966701 - 41966827
Alignment:
Q  123 gttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaac 222  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||  ||  |||||||||||||||||||||||||| | ||||||||||  ||||||||||    
T  41966701 gttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgtaaac 41966800  T
Q  223 tttttactttggttaaatcgtgtttca 249  Q
    ||||||||||||||||||| |||||||    
T  41966801 tttttactttggttaaatcttgtttca 41966827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 26575001 - 26574882
Alignment:
Q  129 ggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaacttttta 228  Q
    |||| |||||||||||||| |||| ||||| ||  || | ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  26575001 ggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaacttttta 26574902  T
Q  229 ctttggttaaatcgtgtttc 248  Q
    || |||||||||||||||||    
T  26574901 ctgtggttaaatcgtgtttc 26574882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 561319 - 561273
Alignment:
Q  172 ttgatgtttgggtgatgaaagaatatggctctagagatatttggtgt 218  Q
    ||||||||||||| |||||||||||||| | |||||||| |||||||    
T  561319 ttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt 561273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 285
Target Start/End: Complemental strand, 4629 - 4455
Alignment:
Q  111 attgatgctgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggctctagagata 210  Q
    ||||||| ||| | ||||||||  ||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| ||||||| |  | |||||    
T  4629 attgatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagata 4530  T
Q  211 tttggtgtaaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatattatt 285  Q
     ||||||||||||||||||| || | ||||||||| ||| ||  |||||| |||||| ||| ||||||| |||||    
T  4529 gttggtgtaaactttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttatt 4455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 36224526 - 36224454
Alignment:
Q  161 aactaatgaaattgatgtttgggtgatgaaagaatatggctctagagatatttggtgtaaactttttactttg 233  Q
    ||||||| || |||||||||||||||||||||||||||| | |||||||| |||||||||| | |||||||||    
T  36224526 aactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg 36224454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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