View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_2 (Length: 772)
Name: NF1283_low_2
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 9 - 678
Target Start/End: Complemental strand, 38663852 - 38663185
Alignment:
| Q |
9 |
gaagaatatgagcgaagaagatgaagnnnnnnnnttaggtgttgttgttgatgatgaggaagaaagaagagggaagatgataaaaagtgaaacaaattag |
108 |
Q |
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| T |
38663852 |
gaagaatatgagggaagaagatgaagaaaaaaaattaggtgctgttgttgatgatgaggaagaaagaagagggaagatgatgaaaagtgaaacaaattag |
38663753 |
T |
|
| Q |
109 |
gtgttggtagatcagtgttacatgcaatgaacttacaatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaat |
208 |
Q |
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|||||||| ||| | ||||||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||| || |||||||||||||| | ||||||| |
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| T |
38663752 |
gtgttggtggataactgttacatgcaataaacgtacaatataataactgaaatcacatctgaaatactagacattagaaaaattaacggactctatcaat |
38663653 |
T |
|
| Q |
209 |
ttgactgacaaaacatatttaagggaccgaatggaaannnnnnnnnngagttaggggaccaaataaaaaacaacaaattatttatgtaattaagccataa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
38663652 |
ttgactgacaaaacatatttaagggaccgaatggaaaaaaaaatta-gagttaggggaacaaataaaaa-caacaaattatttatgtaattaagccataa |
38663555 |
T |
|
| Q |
309 |
tttaaaattgggcccaccatattttattatatattcaagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaacca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663554 |
tttaaaattgggcccaccatattttattatatattcaagcagtgtgggtaacaagaactgtgacataaccgaaccgtccccagtctctcgcgaccaacca |
38663455 |
T |
|
| Q |
409 |
caaactcccgactctaccaccactctagccacccaactctcactctatctcactacgattttgatgagtgaacactctttgttgaataatcccccattca |
508 |
Q |
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| T |
38663454 |
caaactcccgactctaccaccactctagccacccaactctcactctatctcactacgattttgatgagtgaacactctttgttgaataatcccccattca |
38663355 |
T |
|
| Q |
509 |
agaattttttggacctgtgacaattctaccaattgtctctgtcgccagagaccccttgccttccaagaatcgcagccgtgcttcggattgggagttcttg |
608 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663354 |
agaattttttggacctgtgacaattctaccaactgtctctgtcgccagagaccccttgccttccaagaatcgcagccgtgcttcggattgggagttcttg |
38663255 |
T |
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| Q |
609 |
aacccaccgggtgtaggagattatggagattatgtggattggcgttccactgtaaatgcttcaagagagt |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663254 |
aacccaccgggtgtaggagattatggagattatgtggattggcgttccactgtaaatgcttcaagagagt |
38663185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 45395887 - 45395935
Alignment:
| Q |
62 |
atgaggaagaaagaagagggaagatgataaaaagtgaaacaaattaggtg |
111 |
Q |
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| T |
45395887 |
atgaggaagaa-gaagagggaagatgatgaaaagtgaaaaaaattaggtg |
45395935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 29861663 - 29861572
Alignment:
| Q |
144 |
caatataatgactgaaatcacatctgaaatattagactttggaaaaattaacggattgtatcaatttgactgacaaaacatatttaagggacc |
236 |
Q |
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|||| ||||| |||||||| ||||| ||||||||||| | ||||| ||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
29861663 |
caatctaatggctgaaatcgcatctaaaatattagacataa-aaaaactaacggaatggatcaatttgactgacggaacatatttaagggacc |
29861572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 35563182 - 35563104
Alignment:
| Q |
102 |
aaattaggtgttggtagatcagtgttacatgcaatgaacttacaatataatgactgaaatcacatctgaaatattagac |
180 |
Q |
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||||||| | ||||||||||| ||||||| | ||| || | |||| ||||| |||||||||||||| ||||||||||| |
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| T |
35563182 |
aaattagatattggtagatcaccgttacatacgatggacctgcaatctaatggctgaaatcacatctaaaatattagac |
35563104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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