View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1283_low_22 (Length: 324)

Name: NF1283_low_22
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1283_low_22
NF1283_low_22
[»] chr4 (2 HSPs)
chr4 (30-312)||(21835294-21835576)
chr4 (225-265)||(27112157-27112197)
[»] chr5 (2 HSPs)
chr5 (224-265)||(26718885-26718926)
chr5 (224-265)||(26988629-26988670)
[»] chr6 (1 HSPs)
chr6 (225-265)||(2477525-2477565)
[»] chr1 (1 HSPs)
chr1 (225-265)||(6221810-6221850)
[»] chr2 (3 HSPs)
chr2 (230-265)||(11952534-11952569)
chr2 (211-265)||(37182766-37182820)
chr2 (224-265)||(12694801-12694842)
[»] chr8 (1 HSPs)
chr8 (204-265)||(39332327-39332388)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 21835294 - 21835576
Alignment:
Q  30 gttattagggtcttaaaacttttctttatatctgttgagcttcatagtgcttttgcagggtgatttactgcatttccatggctgttatagcatatatgag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835294 gttattagggtcttaaaacttttctttatatctgttgagcttcatagtgcttttgcagggtgatttactgcatttccatggctgttatagcatatatgag 21835393  T
Q  130 cttcaatacgaatgacaaaaactctatatgtatttgtgtcttaataacacatttatttaggtatatatgaatagcagggctgttcctaagttttcggaga 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21835394 cttcaatacgaatgacaaaaactctatatgtacttgtgtcttaataacacatttatttaggtatatatgaatagcagggccgttcctaagttttcggaga 21835493  T
Q  230 ctcggttctgaaagtgaaaagagacccgtaataaaaggatctagcccaaagttctggtagtatctagccgctggatctatatt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835494 ctcggttctgaaagtgaaaagagacccgtaataaaaggatctagcccaaagttctggtagtatctagccgctggatctatatt 21835576  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 27112197 - 27112157
Alignment:
Q  225 ggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  27112197 ggaggctcggttctgtaagtgaaaagagacccgtaataaaa 27112157  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 26718885 - 26718926
Alignment:
Q  224 cggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  26718885 cggaggctcggttctgtaagtgaaaagagacccgtaataaaa 26718926  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 26988629 - 26988670
Alignment:
Q  224 cggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  26988629 cggaggctcggttctgtaagtgaaaagagacccgtaataaaa 26988670  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 2477525 - 2477565
Alignment:
Q  225 ggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  2477525 ggaggctcggttctgtaagtgaaaagagacccgtaataaaa 2477565  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 6221850 - 6221810
Alignment:
Q  225 ggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  6221850 ggagactcggttctgtaaatgaaaagagacccgtaataaaa 6221810  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 11952534 - 11952569
Alignment:
Q  230 ctcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    |||||||||| |||||||||||||||||||||||||    
T  11952534 ctcggttctgtaagtgaaaagagacccgtaataaaa 11952569  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 37182820 - 37182766
Alignment:
Q  211 gttcctaagttttcggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    |||||||||  | ||||| ||||| |||| |||||||||||||||||||||||||    
T  37182820 gttcctaagaatccggaggctcggctctgtaagtgaaaagagacccgtaataaaa 37182766  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 12694842 - 12694801
Alignment:
Q  224 cggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    ||||| ||||| |||| |||||||||||||||||||||||||    
T  12694842 cggaggctcggctctgtaagtgaaaagagacccgtaataaaa 12694801  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 39332327 - 39332388
Alignment:
Q  204 cagggctgttcctaagttttcggagactcggttctgaaagtgaaaagagacccgtaataaaa 265  Q
    |||||| ||||||| |  ||||||| |||||||||| | |||||||||||| ||||||||||    
T  39332327 cagggccgttcctacgaattcggaggctcggttctgtaggtgaaaagagactcgtaataaaa 39332388  T

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