View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_23 (Length: 304)
Name: NF1283_low_23
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 672059 - 671797
Alignment:
| Q |
30 |
ggatagtacatcatacacgtcactgctatctacaggnnnnnnntgcacatatttgatatcattattatttcaaaattgtcattaaataacaaaatgggtt |
129 |
Q |
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| T |
672059 |
ggatagtacatcatacacgtcactactatctacaggaaaaaaatgcacatatttgatatcattattatttcaaaattgtcattaaataacaaaatgggtt |
671960 |
T |
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| Q |
130 |
cgatatagggaaggactattaatccattgtacgtacgtaatctaattccaatggaaagtatatcaaaagtaggtttctaagaagnnnnnnnntataaaag |
229 |
Q |
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| T |
671959 |
cgatatagggaaagactattaatccattgtacgtacgtaatctaattccaatggaaagtatatcaaaagtaggtttctaagaagaaaaaaaatataaaag |
671860 |
T |
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| Q |
230 |
taggttgatgactaatttgtgttgttgggttatccttgttattggaattgttgttgatttctg |
292 |
Q |
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| T |
671859 |
taggttgatgactaatttgtgttgttgggttatccttgttattggaattgttgttgatttctg |
671797 |
T |
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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 29301094 - 29301214
Alignment:
| Q |
76 |
acatatttgatatcattattatttcaaaattgtcattaaataacaaaatgggttcgatatagggaaggactattaatccattgtacgtacgtaat---ct |
172 |
Q |
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| T |
29301094 |
acatatttgatatcattatt---tcaaaattgtcattaaatatcaaaatgggt-cgatatagggtaggattattaatccattgtacgtacgtaatgtaat |
29301189 |
T |
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| Q |
173 |
aattccaatggaaagtatatcaaaa |
197 |
Q |
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| T |
29301190 |
aattccattggaaagtatatcaaaa |
29301214 |
T |
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