View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1283_low_28 (Length: 290)
Name: NF1283_low_28
Description: NF1283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1283_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35449150 - 35449371
Alignment:
| Q |
1 |
aattgggcaggcctccaggacattttcatcagtaccaaacatgcgagtagaagaacttggatattcaggttctgatatggctgttccctcattaattcct |
100 |
Q |
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| T |
35449150 |
aattgggcaggcctccaggacattttcatcaataccaaacatgcgagtagaagaacttggatattcaggttctgatatggctattccctcattaattcct |
35449249 |
T |
|
| Q |
101 |
tgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatccaccattattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35449250 |
tgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagcagacacgtcaaccataccaaacgatgatccaccattattca |
35449349 |
T |
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| Q |
201 |
actcataagataaattggattc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35449350 |
actcataagataaattggattc |
35449371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 35448919 - 35449094
Alignment:
| Q |
1 |
aattgggcaggcctccaggacattttcatcagtaccaaacatgcgagtagaagaacttggatattcaggttctgatatggctgttccctcattaattcct |
100 |
Q |
| |
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||||||||||| ||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||| | ||| ||||||||||| |
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| T |
35448919 |
aattgggcaggtctccatgacattttcatcaacaccaaacatgctaggagaagaacttggatattcaggttctgttatggccatccccccattaattcct |
35449018 |
T |
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| Q |
101 |
tgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccatac |
176 |
Q |
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| T |
35449019 |
tgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccatac |
35449094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 35440925 - 35441087
Alignment:
| Q |
27 |
catcagtaccaaacatgcgagtagaagaacttggatattcaggttctgatatggctgttccctcattaattccttgttgaaagcccatgttcgtgttctg |
126 |
Q |
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|||||| |||||||||| ||| |||| |||||| || ||||||| ||||||| ||||| |||||| ||||||||| | |||||||| | |||||| |
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| T |
35440925 |
catcagcaccaaacatgtgaggagaaaaacttgaattatcaggtttggatatggtcattcccccattaactccttgttgcatacccatgtttgagttctg |
35441024 |
T |
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| Q |
127 |
actataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
189 |
Q |
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| || || |||| ||| | |||||| ||||||||| |||||||||||||| ||||||| |
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| T |
35441025 |
agtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 35448780 - 35448886
Alignment:
| Q |
90 |
cattaattccttgttgaaagcccatgttcgtgttctgactataatgcatgtttgaacaatctccctgagcagacacgtcaaccataccaaacaatgatcc |
189 |
Q |
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|||||| |||||| || || ||||||| | ||||||||||| ||||||| || || |||||| |||||||||| ||||||||| ||| ||||||| |
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| T |
35448780 |
cattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagcagacatctcaaccatatgaaatgatgatcc |
35448879 |
T |
|
| Q |
190 |
accatta |
196 |
Q |
| |
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||||||| |
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|
| T |
35448880 |
accatta |
35448886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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